RNA id: TU577803


Basic Information

Item Value
RNA id TU577803
length 2717
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G509034
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42372441 ~ 42403220 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATAAAGTATTGATCTATTGCAGACTGGGACTTTGTCTAATTCTTCATTAACCAGGGCCTTACAACCTCTGGGAATTGGTCAAAGCTATAGTGATAGTTGAGAAAAACCATTGGGATAAAAATTCTCGTGACAACAACAGCAGGCTGGACTTGCCTCCATGATGTCCTTGATGAGAGGGGTCCATCGGGAGAGCTGGTAGGTCTGCTCACTCACTCGCTCCTTCCGGTCAGTCTTTTTCACTTTGCGGGTCGGGTTCCCCTCTAAGATGATGGGCATGCCCATATGGGCCATGTTGGCGATGATGTCACTGTCCTCAGGAGGGATGTTGGCATGCTGGAGGAGCTTACAGAGGTTCTCCTCCGAAACACCGTTCTTCATGAAGATGTACAGCAGGATTATGCGGATCTTGTCGAAGACAGTGACATCTTTATCCAGCAGGACGGGTACGATGGCCCTCATGGGGTCCTTGATCTTCTCCCCCTCTGCATCTGTACCCATCGCTAGATCCTGGGGTAGGGCAAGACAGTTGGAGGGGCACGGGGAGGATTAGAGGAAGAGAGATCTAACagatatacaaaacattaggaacacctgctctttccatgacaggtgaccaggtgaatccaggtgaaagctatgatcccttattgatgtcacttgttaaatccacttccaatcagtgtagatgaagggaaggagacaggttaaagaaggatttttaagccttgagacaattgagtaatggattgtgtatgtatgccattcagagggtgaatgggaaaacAAAATATTCAAGTCCCTTTGAACATGGTATGctagtagatgccaggcgcaccggtttgagtgtgtcaacaagtgcaacgctgctgggtttcacgctcaacagtttcccatgtgtatcaagaatggtccaaccaCCACCTGCACGCTGACACTACAGTCAAATGGATATAAAGAACTCACTAAAGACTAAAGGAAATGGAAGTCATGACTCATGCTATGTCGTGAAGGAATTATTTCGTTTCTTGTTAAGTTCCCTCTTCTTGTCCCTATTAAGTATGCTGCACGACTATGGACTTCAACGGGATATTAATTATTGGCAGAGGTAGCCTAACGGTGACTATTACTGGTCACATGTCACGTCATTCAAACGGGAGAATATAGGCTAACTGCATATACATTCTTTGTGTTGATGAAAATATTATATGACTAATCATAGATCCGATTTATTTGTAATTGTTTTTTCAATTATTATTTTGGAGTTGGGTTTGTAGGTGCGCTCGTCTCCATGCCAGTCGGGTCGGCCGGCCGGGTTGGGTCTCTCCCGGGTCCTTGGAAAATCCCTTTGGTCGAGGGCAGGGGCCTCCACCGACCAGTGGCTCGAGAGCACCTACCTGTAGCGGTTTGTATGGGTCTATTCTGTTTGGATTTTCACATTGATGTGGTGACTGGGTGCCTGTCCACTTTCAGCATAAAGATTCCAAATTCCAAagatccctctcttttcctcctcatAAAGGATTCAATTTATTAGCCGTATGTTTTTTATGTTGGTGCTGAGAACTCAGTTGGGGAAAATGACTAAAGCTGGTCCATCATAATATGGCCCGAATAATCAGGATTGATAGATTAATGTGCCACTATAGCCTCGCCCTGGCTCTCAGACTGGGATTCAAATATTGAGAGGTGGTTCTGTTCTGTAGACCGTACCAGGGTAGCTAAAAGGGTAGCTAAAATAAAATCTAAACGTTTATTTGGACTAATGAACGCAATGGAAGATGCTCATAGGAGACGATGGCCTAGACAACGTTAAATGTATCTCCAAATGCGGTCAATATATCGTCGCTTTTTCAATTTTCAATGGGTTACCTTAAGCATGGTTTCATACGTAGTGAACATAATTTAAGGTTAGAAATGGGGAGGATTGAACGGTTTGGTGAAGAATAATGATTTCCATTTTCAAGACTCCACCTCCCATGTGGCTTGACCAATCAGTATAACGTACTGATTCAGTCTTTGTCAGGTGTTTTTATTCTGTTATGTAATGTTGGCTGTATACGGTGTGTTTATGTTTTTCTTTATCTTAATGTTGTCCAAACGTGAAATATTCTCAGATGGTTCTCATTGCTCTTTCATTGCATGTTGCGAATCCTGTAACAACAGCAAACCCCAATGAGTGATTTAAAAAACAACTACTATTCATTTGAAAGGAATTCATTTGCCTATCAAATGTACAAAAGTATTGGCtcagtttaaaaaaagaaaaggtaCACAGAAAAGGTATAGGACGTCCTCCAAACAGCCCTTTTAAAGAATTACAAGCTGCAAGATCAGCATTAAACCAACGGTTTACAGACAAAGCAGAAGCATCTATTTCCCAGTCTGGGCACAGATTATAGGAACATGAAAATAAGACAAGTCGACTGGCAAAGAAGAGAACTTCACCAGACGCTATACTTTCAATTAAAAGGATCAAACTACTGACTCCAGCAATCATCTGGCTGACGTACAACACTTTCTCGATAAACTATGTCTCTCCCAACAATACATGTGGGAGACAGATAATTATTATGCAAGGAGATATCCAAAGACGAAATACAAGAGATGATTCAAACCCTTAAAGATGGGGAAACCCCCAGGACATGATGGGTTTGGACCAGAGTTTTATCGGAATGGTGAAGGTTTCATAACGGAACCCCTTCTCAAAATGTATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU577814 lncRNA downstream 12270 42386073 ~ 42386706 (-) True G509045
TU577645 lncRNA downstream 255136 42142383 ~ 42143840 (-) True G508888
TU577663 lncRNA downstream 278585 42120186 ~ 42120391 (-) True G508902
TU577660 lncRNA downstream 283234 42115494 ~ 42115742 (-) True G508899
TU577638 lncRNA downstream 295462 42103030 ~ 42103514 (-) True G508884
TU577804 lncRNA upstream 8097 42410327 ~ 42417077 (-) True LOC118964871
TU577827 lncRNA upstream 15595 42417825 ~ 42418041 (-) True G509058
TU577828 lncRNA upstream 15881 42418111 ~ 42418353 (-) True G509059
TU578070 lncRNA upstream 17053 42419283 ~ 42420286 (-) True G509281
TU578071 lncRNA upstream 20760 42422990 ~ 42423760 (-) True LOC110525992
XM_021606544.2 mRNA downstream 38584 42302921 ~ 42360392 (-) True LOC110525990
XM_021606543.2 mRNA downstream 97227 42252483 ~ 42301749 (-) True npdc1b
XM_036980138.1 mRNA downstream 157538 42146659 ~ 42241438 (-) False LOC110525987
XR_005052110.1 mRNA upstream 2609 42404839 ~ 42413251 (-) False LOC118964871
XM_036981747.1 mRNA upstream 21181 42423411 ~ 42520495 (-) False LOC110525992
XM_021606552.2 mRNA upstream 137634 42539864 ~ 42549214 (-) True noxa1
XM_021606553.2 mRNA upstream 174299 42576529 ~ 42587286 (-) False LOC110525994
XM_021606554.2 mRNA upstream 174299 42576529 ~ 42587286 (-) False LOC110525994
TU577652 other downstream 254091 42144097 ~ 42144885 (-) True G508891
TU577033 other downstream 577766 41820855 ~ 41821210 (-) True G508303
TU576563 other downstream 937054 41421024 ~ 41461922 (-) True G507906
TU576567 other downstream 959962 41434975 ~ 41439014 (-) True znf131
TU575676 other downstream 1856647 40540659 ~ 40542329 (-) True G507063
TU578229 other upstream 241289 42643519 ~ 42645869 (-) True G509432
TU578716 other upstream 674462 43076692 ~ 43077157 (-) True G509902
TU578766 other upstream 720316 43122546 ~ 43123092 (-) True G509949
TU578769 other upstream 722351 43124581 ~ 43125387 (-) True G509952
TU579133 other upstream 1121484 43523714 ~ 43524108 (-) True G510310

Expression Profile