RNA id: TU577814


Basic Information

Item Value
RNA id TU577814
length 608
lncRNA type intronic
GC content 0.42
exon number 2
gene id G509045
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42386073 ~ 42386706 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttattaggctgtttttacatcagcagtaACAACTTGCTTTACAGTTACCCGTCCTATACACAAAAATGTTGGTCACTTTCGCAAAAATCCTAGGTtgtccagaaatcctggttggaatatTCCCGGAATCAGGATAGAATAAGCAAGAAATCtgtgaatcctccaaccaggaatTTATGAATTTATGACCTGCAGGTGGCACTGTATcagtgtgtgagactgtgtgggTGAGGTAATGTAATCCTATTTGACTGCATTGATTCCCAAATGACTGACAATACAGTACGGTGTTGTAGGATCAGATGGGACATCTTTCATTAATTCCTCCAGCCTTGAGAAAGGCAGTTAAACCCAAACAGCAACTGCTCCCTGGGCTCCGATGATGTGGacgtcaattaaggcagccccccgtacctttctgattcagagaggttgagttaaatgcggaagacgcaTTTCAGTTGAATCCACTCAGTTGTGCAAATGACTATGAATCCCTTTTCCCCTTCCCATTTCTTTCCCTTATGACTGATttctgaaatcaaatcaaataaagctttatttatacagcacgtTTCCGACATGGAATGCAACGCAATGTGCTttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU577645 lncRNA downstream 242233 42142383 ~ 42143840 (-) True G508888
TU577663 lncRNA downstream 265682 42120186 ~ 42120391 (-) True G508902
TU577660 lncRNA downstream 270331 42115494 ~ 42115742 (-) True G508899
TU577638 lncRNA downstream 282559 42103030 ~ 42103514 (-) True G508884
TU577636 lncRNA downstream 283923 42101869 ~ 42102150 (-) True G508882
TU577803 lncRNA upstream 12270 42398976 ~ 42402230 (-) True G509034
TU577804 lncRNA upstream 23621 42410327 ~ 42417077 (-) True LOC118964871
TU577827 lncRNA upstream 31119 42417825 ~ 42418041 (-) True G509058
TU577828 lncRNA upstream 31405 42418111 ~ 42418353 (-) True G509059
TU578070 lncRNA upstream 32577 42419283 ~ 42420286 (-) True G509281
XM_021606544.2 mRNA downstream 25681 42302921 ~ 42360392 (-) True LOC110525990
XM_021606543.2 mRNA downstream 84324 42252483 ~ 42301749 (-) True npdc1b
XM_036980140.1 mRNA downstream 144635 42146502 ~ 42241438 (-) False LOC110525987
XM_036980143.1 mRNA downstream 144635 42146502 ~ 42241438 (-) False LOC110525987
XM_036980141.1 mRNA downstream 144635 42146519 ~ 42241438 (-) False LOC110525987
XR_005052110.1 mRNA upstream 18133 42404839 ~ 42413251 (-) False LOC118964871
XM_036981747.1 mRNA upstream 36705 42423411 ~ 42520495 (-) False LOC110525992
XM_021606552.2 mRNA upstream 153158 42539864 ~ 42549214 (-) True noxa1
XM_021606553.2 mRNA upstream 189823 42576529 ~ 42587286 (-) False LOC110525994
XM_021606554.2 mRNA upstream 189823 42576529 ~ 42587286 (-) False LOC110525994
TU577652 other downstream 241188 42144097 ~ 42144885 (-) True G508891
TU577033 other downstream 564863 41820855 ~ 41821210 (-) True G508303
TU576563 other downstream 924151 41421024 ~ 41461922 (-) True G507906
TU576567 other downstream 947059 41434975 ~ 41439014 (-) True znf131
TU575676 other downstream 1843744 40540659 ~ 40542329 (-) True G507063
TU578229 other upstream 256813 42643519 ~ 42645869 (-) True G509432
TU578716 other upstream 689986 43076692 ~ 43077157 (-) True G509902
TU578766 other upstream 735840 43122546 ~ 43123092 (-) True G509949
TU578769 other upstream 737875 43124581 ~ 43125387 (-) True G509952
TU579133 other upstream 1137008 43523714 ~ 43524108 (-) True G510310

Expression Profile