RNA id: TU577848


Basic Information

Item Value
RNA id TU577848
length 210
lncRNA type intronic
GC content 0.44
exon number 1
gene id G509078
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42443114 ~ 42443323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtcaacgttgtgaacaaagtTCCCCATGGTGGCGACGGGGTTAtaatatgggcaggcataagctacggacaacaaacacaaatgcattttatcaatggaaatttgaatgcacagagataccatgatgagatcctgaggcccactgtgaggcccatttttgtaaggtatctgtgaccaacagttgCATATCTGtactcccagtcatgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU577847 lncRNA upstream 530 42442366 ~ 42442584 (+) True G509077
TU577839 lncRNA upstream 6668 42436214 ~ 42436446 (+) True G509070
TU577837 lncRNA upstream 10500 42432361 ~ 42432614 (+) True G509068
TU577833 lncRNA upstream 14518 42428305 ~ 42428596 (+) True G509064
TU577831 lncRNA upstream 20968 42421342 ~ 42422146 (+) True G509062
TU577850 lncRNA downstream 1907 42445230 ~ 42445437 (+) True G509080
TU577924 lncRNA downstream 104908 42548231 ~ 42549226 (+) True G509148
TU577939 lncRNA downstream 127236 42570559 ~ 42573399 (+) True G509161
TU577941 lncRNA downstream 133230 42576553 ~ 42576898 (+) True G509163
TU577942 lncRNA downstream 134896 42578219 ~ 42588368 (+) True G509164
XM_021606545.1 mRNA upstream 28006 42372531 ~ 42415108 (+) False stxbp1b
XM_021606548.1 mRNA upstream 28006 42372531 ~ 42415108 (+) True stxbp1b
XM_021606542.2 mRNA upstream 193848 42244505 ~ 42249266 (+) True LOC110525988
XM_021606540.2 mRNA upstream 299506 42139067 ~ 42143608 (+) False paxx
XM_036980149.1 mRNA downstream 159985 42603308 ~ 42643804 (+) False camsap1b
XM_036980147.1 mRNA downstream 159986 42603309 ~ 42645904 (+) False camsap1b
XM_036980148.1 mRNA downstream 159986 42603309 ~ 42645904 (+) True camsap1b
XM_021606561.2 mRNA downstream 202711 42646034 ~ 42651728 (+) False LOC110525996
XR_005052112.1 mRNA downstream 335938 42779261 ~ 42780791 (+) True LOC118964872
TU577295 other upstream 311174 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 971706 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 1583592 40568726 ~ 40859522 (+) True fbxl17
TU574820 other upstream 1876685 40566067 ~ 40566429 (+) True G506285
TU574816 other upstream 1895601 40544863 ~ 40547513 (+) False G506281
TU577938 other downstream 123782 42567105 ~ 42569384 (+) False G509160
TU577937 other downstream 123925 42567248 ~ 42570169 (+) True G509160
TU579244 other downstream 1214145 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 2741116 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 2774404 45217727 ~ 45220782 (+) False LOC110526028

Expression Profile