RNA id: TU578131


Basic Information

Item Value
RNA id TU578131
length 3028
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G509341
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42567053 ~ 42571449 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caatttgttgggccttcctgtgacactgcCTAGTGtaataggtcctggatggtaggaagcttggcaccagtaatgtactgggttgtacgcactactctctgtagtgccttacgattagatgccgagcagttgccataccaggtggggatgcaaccggtcaggaggCTCTCGATGGTGAAGCTGTGAaacctttgaggatctgaggacccatgccaaatcttttcagtctcctgagggtgaaaAAGGCATTGTCAtgtcctcttcacaactttcttggtgtgttcggaccgtgttagtttgttagtgatgtggacaccaaggaacttaactctTAACCCACTCCGCTACAGCccagttgatgtgaatgggggtgtgctcggtcctccttttcctgtagtccacaatcatctcctttgtcttgctcacgttgagggagaggttgttatcctggcacaacactgccaggtctcttgtcctcctccctataggctgtctcatcgttgtcggtgatcaggcctaccgccgctgtgtcgtcagcaaacttaatgatggtgttggagttgtttgGCCACGCAGACGTGGATGAACtgggagtacatgaggggactaagcacacagcccTAAGGTGCCCCcatgttaaggatcagcgtggcagatttcaactgcagtccctgggcaggttattaaaaacaattacaatatagacaatcattgagcagtgagcacacgcagagcaacataggacaagcaagacgtagcatacagacagagcaacataagacaaaattcataaaagtgtttccacacctcacaagctacagacaacacggAAAACGGCAATACACAGCTATGGATTATGATCACAAATcagattgacctttagccatgtattcatacatttttgtgaaagtgtgataaggtggtgcagttgtgtgtctgaaggcagtgtattccagacatgggaagctctcacagagaaagcggatttactaaaggtgcttttccttaagggaactatacagtcacctctcaaggcagaccttgtggatctgctgccatatgtttgggttttctgttgaacaaaaatactgagtggagggggagccaggccatttaggatcttgaatacaagacatgcgtcggtgtattgcacaagattttcccaactcaggagctcatgctttctgaggatgtaacagaaCATcctcccagaacatattccagtctgtgctagcaaaagagtcctgtagcgtagcatccgcatcatctgaccacttccgtattgggcgagtcactggtacttcctgctttagttgttgcttgtaagcaggaatcaggaggatagaattaaggtcagatttgccaaatggttggcgagggagagctttataCGCGTCTCTGAATGTGGGGTAAAGGTAGTATAGCATTTTTGGTTGctcatgtgacatgctggtagaaatgaggtaaaatggatttaagtttgcctgcattgaagtccctggccactaggagcgtcgcttctggatgagcattttcttagtgccagcgtcggtttgtggtggtaaatagacggctacgaaaaatatagatgaaaacctTCTTGGTAGAtggagtacctcatgataagctgtaggccacactaactcaggcgagcaatacctcaataTTAGACATCTCGCagcagctgttattgacaaattctcacacacccccaccccttgtCTAACGgatgtagctgttctgtcctgccgatgcacggaaaacccagccaactgtatattatccgtgtcTTCTTTCAATGTcacgttggtaggatagtctcgaacggagctcataCAGTTTACTCTCCAGTGATTTCATGTTGGCCAATAGAATGGATGGTAGAGCCGGGTTATCCACTCACCTACAAATTCTCACAAGGTACCCTGATCTCCGCCCcttgtatttctttattttcttcATGCGAACGACAGGGATTTTGGCTTTTGTCTGAGAGCAACTTTATATCCTTTGCATCAGACTCAATAAAGAAAACATATtagtccagtttgaggtgagtaatcgctgttcttatccagaagctcttttcacaAGACACGCTAgcatcaacattatgtacaaaataagttacaaacaatgcgaaaaaacacacaaaatagcacaattgttgAAGAGCATGTAAAACGGCAgtcatcccctccggcgccattcttTAACGATTTACATTTGATCAGTGCTTAAGGGGTCTTCTTGGTGTGTGTGAGTCATTTTAGCAGTTGGGATTGTTCACTGTGTGTTCATACAGTACTGTCCGGTACCAACAACCAATGCAATATAGTCTCTCATTCTGTTAAACCGACTAGCCTCGCCCTCGGGGCTACTGTCATGCAAATCATTATTACATACAAGAGCATTTCTGTTGCAGTATTCTTTTTGAATCCTGTGCTTTGTTTACGTGAAATGGGGAGTACGTTTTGTTTCAACTGGGATGGCATTCTGTTCTAGCATTAAACCACTTTAAGCACTTATTAACCTATGCTGCTGTGTGATCTCAGGATGCATGTTGTGTGCAGCACTGACACGTACACGACTCTTCTGTTGATTTAAGTATCAACACAGTGACTTGGTATTTGTCTGGTGATTATCTGCTCTTGTACTTACTCCTCTATTTGCCCAACTCTCTTGTCTTGCAGCTGGTCCCAATTTGCTCCCTATCACTATGCTCTTGGTCCTAACCAGTATGTGAACCTGACCCTTGGATGTCTGCAGATCTGTAGGGTGGACCCTCCACCACTACACTGCTTATACCTTTCCAAAGCCTTCAGATCCGCAGACATCAATGGGTTGggccaaaggaggaggaggggggggttaTGGAGCACATTGCGACCAACTGTTGCTCTGAGCAAGTCCTCACTAACTATCTGATCTAATTCAGATAATTCCGCTGTCACGCTGGGTCATTTTAACGTGAATTTGTTCATTCCTCAACTGTGGAAAATGTGAAAAGCCTTGTAACATCACTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578085 lncRNA downstream 120470 42446355 ~ 42446583 (-) True G509296
TU578081 lncRNA downstream 134105 42432713 ~ 42432948 (-) True G509292
TU578075 lncRNA downstream 138924 42427834 ~ 42428129 (-) True G509286
TU578074 lncRNA downstream 140091 42426744 ~ 42426962 (-) True G509285
TU578073 lncRNA downstream 140438 42426283 ~ 42426615 (-) True G509284
TU578133 lncRNA upstream 3916 42573996 ~ 42574822 (-) True G509342
TU578279 lncRNA upstream 169910 42739990 ~ 42740374 (-) True G509480
TU578282 lncRNA upstream 175984 42746064 ~ 42746279 (-) True G509483
TU578286 lncRNA upstream 179442 42749522 ~ 42749918 (-) True G509487
TU578288 lncRNA upstream 183117 42753197 ~ 42753503 (-) True G509489
XM_021606552.2 mRNA downstream 17839 42539864 ~ 42549214 (-) True noxa1
XM_036981747.1 mRNA downstream 46558 42423411 ~ 42520495 (-) False LOC110525992
XR_005052110.1 mRNA downstream 153802 42404839 ~ 42413251 (-) False LOC118964871
XM_021606544.2 mRNA downstream 206661 42302921 ~ 42360392 (-) True LOC110525990
XM_021606543.2 mRNA downstream 265304 42252483 ~ 42301749 (-) True npdc1b
XM_021606553.2 mRNA upstream 6449 42576529 ~ 42587286 (-) False LOC110525994
XM_021606554.2 mRNA upstream 6449 42576529 ~ 42587286 (-) False LOC110525994
XM_021606555.2 mRNA upstream 6885 42576965 ~ 42587286 (-) True LOC110525994
XM_021606563.2 mRNA upstream 84904 42654984 ~ 42729593 (-) False LOC110525997
XM_021606567.2 mRNA upstream 84904 42654984 ~ 42729593 (-) False LOC110525997
TU577801 other downstream 163833 42372441 ~ 42403220 (-) False G509034
TU577652 other downstream 422168 42144097 ~ 42144885 (-) True G508891
TU577033 other downstream 745843 41820855 ~ 41821210 (-) True G508303
TU576563 other downstream 1105131 41421024 ~ 41461922 (-) True G507906
TU578229 other upstream 73439 42643519 ~ 42645869 (-) True G509432
TU578716 other upstream 506612 43076692 ~ 43077157 (-) True G509902
TU578766 other upstream 552466 43122546 ~ 43123092 (-) True G509949
TU578769 other upstream 554501 43124581 ~ 43125387 (-) True G509952
TU579133 other upstream 953634 43523714 ~ 43524108 (-) True G510310

Expression Profile