RNA id: TU578130


Basic Information

Item Value
RNA id TU578130
length 4218
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G509341
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42567053 ~ 42571449 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaaccaaaaaagtgttagacaaataaaatatattttgttcttcaaagtagccaccctttgccttgggagccaggcccagaatAAGATTTCAGAATAAGATTTCCCCCCTATAATACTCCTCCCCCCTATAATACTCCTCCCCCCTCTGACGATTCCACAGGTGAAGAACCCAGATGTGGCGGTCCTGAGCTAGCGTGactacacgtggtctgtggttgtaaggccggttggacgtactgagaaattctctaaaacaacctTGGAGTCAGCTTAtgctagagaaattaacattcaattctctggcaacggctacggtggacattcctgcagtcagcatgccaattgcacacactCAACTTGAAACAcctctggcattgtgttgtgtgagacaactacacattttagtggccttttattttccacagcacaaggtgcacttgtgtaatgataatactgtttaatcagcttcttgatatttccacacctgtcaggtggatggattatcttgacaaaggatgaAATGCTCATTAACGCGTGTAAACGAGTCTGTGCGCACAAATAAGTGTTTTGTGCATACAgaacatttctaggatcttttatttcagctcttgaaaAATGGGACCAGCACTGtacatgttgtgtttttgttcagtgtagtagtgcactatattagggaaTGGTGGGACGCAACCTTTAATTTAATTGCGAGTTTTGGCTATAAGAAGAACATGGCTAATGTGTGTTTTGCAAGATTTGAGTTTTTGTATTCAATATTTGAAATGTGCTGTTGAAGTGACTGTCCTCAGGGAGGCTGCTGTTGTTTCTCTAGCTATGCCACTGTGAGGCCAAACCTCTACTCCTTTTATGGCTTTAACTAATCGATGGTAACGTGGCTTATTGAACAGAGCGTCAATAAGTATGGTTTGGTTAAATGCAATATTtgaacatgatttagattttttttatatataagtATTTCCTTCAATTGTGTGTATTTATAATTAAGCAAAAATAGTTACGTGCTCTTATTAATAATATTACATTTGCGAGAATCTGAAATCTGCCCTTCAAGTTATTGAAATACAATTTATTTACAAAATAGATAGACCTTGAGAAAATGTAGCATTGTTGAATGTCCAATGCATTTTTATAGAGGCTCTAGACCATATTTGCAGCCTTTCTGTATACAGGTCaagaatgcactgtaaatagtcCTGGTGGACTATTTTGATTAATTGATCAgtagttttatggcttgggggtagaagctattaaggaaccttttggacctagacttggtgctccggtaccacttgccgtgcggttgcagagagaacagtcaatgacttgggtgactggagtctttgacaatttgttgggccttcctgtgacactgcCTAGTGtaataggtcctggatggtaggaagcttggcaccagtaatgtactgggttgtacgcactactctctgtagtgccttacgattagatgccgagcagttgccataccaggtggggatgcaaccggtcaggaggCTCTCGATGGTGAAGCTGTGAaacctttgaggatctgaggacccatgccaaatcttttcagtctcctgagggtgaaaAAGGCATTGTCAtgtcctcttcacaactttcttggtgtgttcggaccgtgttagtttgttagtgatgtggacaccaaggaacttaactctTAACCCACTCCGCTACAGCccagttgatgtgaatgggggtgtgctcggtcctccttttcctgtagtccacaatcatctcctttgtcttgctcacgttgagggagaggttgttatcctggcacaacactgccaggtctcttgtcctcctccctataggctgtctcatcgttgtcggtgatcaggcctaccgccgctgtgtcgtcagcaaacttaatgatggtgttggagttgtttgGCCACGCAGACGTGGATGAACtgggagtacatgaggggactaagcacacagcccTAAGGTGCCCCcatgttaaggatcagcgtggcagatttcaactgcagtccctgggcaggttattaaaaacaattacaatatagacaatcattgagcagtgagcacacgcagagcaacataggacaagcaagacgtagcatacagacagagcaacataagacaaaattcataaaagtgtttccacacctcacaagctacagacaacacggAAAACGGCAATACACAGCTATGGATTATGATCACAAATcagattgacctttagccatgtattcatacatttttgtgaaagtgtgataaggtggtgcagttgtgtgtctgaaggcagtgtattccagacatgggaagctctcacagagaaagcggatttactaaaggtgcttttccttaagggaactatacagtcacctctcaaggcagaccttgtggatctgctgccatatgtttgggttttctgttgaacaaaaatactgagtggagggggagccaggccatttaggatcttgaatacaagacatgcgtcggtgtattgcacaagattttcccaactcaggagctcatgctttctgaggatgtaacagaaCATcctcccagaacatattccagtctgtgctagcaaaagagtcctgtagcgtagcatccgcatcatctgaccacttccgtattgggcgagtcactggtacttcctgctttagttgttgcttgtaagcaggaatcaggaggatagaattaaggtcagatttgccaaatggttggcgagggagagctttataCGCGTCTCTGAATGTGGGGTAAAGGTAGTATAGCATTTTTGGTTGctcatgtgacatgctggtagaaatgaggtaaaatggatttaagtttgcctgcattgaagtccctggccactaggagcgtcgcttctggatgagcattttcttagtgccagcgtcggtttgtggtggtaaatagacggctacgaaaaatatagatgaaaacctTCTTGGTAGAtggagtacctcatgataagctgtaggccacactaactcaggcgagcaatacctcaataTTAGACATCTCGCagcagctgttattgacaaattctcacacacccccaccccttgtCTAACGgatgtagctgttctgtcctgccgatgcacggaaaacccagccaactgtatattatccgtgtcTTCTTTCAATGTcacgttggtaggatagtctcgaacggagctcataCAGTTTACTCTCCAGTGATTTCATGTTGGCCAATAGAATGGATGGTAGAGCCGGGTTATCCACTCACCTACAAATTCTCACAAGGTACCCTGATCTCCGCCCcttgtatttctttattttcttcATGCGAACGACAGGGATTTTGGCTTTTGTCTGAGAGCAACTTTATATCCTTTGCATCAGACTCAATAAAGAAAACATATtagtccagtttgaggtgagtaatcgctgttcttatccagaagctcttttcacaAGACACGCTAgcatcaacattatgtacaaaataagttacaaacaatgcgaaaaaacacacaaaatagcacaattgttgAAGAGCATGTAAAACGGCAgtcatcccctccggcgccattcttTAACGATTTACATTTGATCAGTGCTTAAGGGGTCTTCTTGGTGTGTGTGAGTCATTTTAGCAGTTGGGATTGTTCACTGTGTGTTCATACAGTACTGTCCGGTACCAACAACCAATGCAATATAGTCTCTCATTCTGTTAAACCGACTAGCCTCGCCCTCGGGGCTACTGTCATGCAAATCATTATTACATACAAGAGCATTTCTGTTGCAGTATTCTTTTTGAATCCTGTGCTTTGTTTACGTGAAATGGGGAGTACGTTTTGTTTCAACTGGGATGGCATTCTGTTCTAGCATTAAACCACTTTAAGCACTTATTAACCTATGCTGCTGTGTGATCTCAGGATGCATGTTGTGTGCAGCACTGACACGTACACGACTCTTCTGTTGATTTAAGTATCAACACAGTGACTTGGTATTTGTCTGGTGATTATCTGCTCTTGTACTTACTCCTCTATTTGCCCAACTCTCTTGTCTTGCAGCTGGTCCCAATTTGCTCCCTATCACTATGCTCTTGGTCCTAACCAGTATGTGAACCTGACCCTTGGATGTCTGCAGATCTGTAGGGTGGACCCTCCACCACTACACTGCTTATACCTTTCCAAAGCCTTCAGATCCGCAGACATCAATGGGTTGgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578085 lncRNA downstream 120649 42446355 ~ 42446583 (-) True G509296
TU578081 lncRNA downstream 134284 42432713 ~ 42432948 (-) True G509292
TU578075 lncRNA downstream 139103 42427834 ~ 42428129 (-) True G509286
TU578074 lncRNA downstream 140270 42426744 ~ 42426962 (-) True G509285
TU578073 lncRNA downstream 140617 42426283 ~ 42426615 (-) True G509284
TU578133 lncRNA upstream 2547 42573996 ~ 42574822 (-) True G509342
TU578279 lncRNA upstream 168541 42739990 ~ 42740374 (-) True G509480
TU578282 lncRNA upstream 174615 42746064 ~ 42746279 (-) True G509483
TU578286 lncRNA upstream 178073 42749522 ~ 42749918 (-) True G509487
TU578288 lncRNA upstream 181748 42753197 ~ 42753503 (-) True G509489
XM_021606552.2 mRNA downstream 18018 42539864 ~ 42549214 (-) True noxa1
XM_036981747.1 mRNA downstream 46737 42423411 ~ 42520495 (-) False LOC110525992
XR_005052110.1 mRNA downstream 153981 42404839 ~ 42413251 (-) False LOC118964871
XM_021606544.2 mRNA downstream 206840 42302921 ~ 42360392 (-) True LOC110525990
XM_021606543.2 mRNA downstream 265483 42252483 ~ 42301749 (-) True npdc1b
XM_021606553.2 mRNA upstream 5080 42576529 ~ 42587286 (-) False LOC110525994
XM_021606554.2 mRNA upstream 5080 42576529 ~ 42587286 (-) False LOC110525994
XM_021606555.2 mRNA upstream 5516 42576965 ~ 42587286 (-) True LOC110525994
XM_021606563.2 mRNA upstream 83535 42654984 ~ 42729593 (-) False LOC110525997
XM_021606567.2 mRNA upstream 83535 42654984 ~ 42729593 (-) False LOC110525997
TU577801 other downstream 164012 42372441 ~ 42403220 (-) False G509034
TU577652 other downstream 422347 42144097 ~ 42144885 (-) True G508891
TU577033 other downstream 746022 41820855 ~ 41821210 (-) True G508303
TU576563 other downstream 1105310 41421024 ~ 41461922 (-) True G507906
TU578229 other upstream 72070 42643519 ~ 42645869 (-) True G509432
TU578716 other upstream 505243 43076692 ~ 43077157 (-) True G509902
TU578766 other upstream 551097 43122546 ~ 43123092 (-) True G509949
TU578769 other upstream 553132 43124581 ~ 43125387 (-) True G509952
TU579133 other upstream 952265 43523714 ~ 43524108 (-) True G510310

Expression Profile