RNA id: TU577937


Basic Information

Item Value
RNA id TU577937
length 2922
RNA type TUCP
GC content 0.46
exon number 1
gene id G509160
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42567105 ~ 42570169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCGGATCTGAAGGCTTTGGAAAGGTATAAGCAGTGTAGTGGTGGAGGGTCCACCCTACAGATCTGCAGACATCCAAGGGTCAGGTTCACATACTGGTTAGGACCAAGAGCATAGTGATAGGGAGCAAATTGGGACCAGCTGCAAGACAAGAGAGTTGGGCAAATAGAGGAGTAAGTACAAGAGCAGATAATCACCAGACAAATACCAAGTCACTGTGTTGATACTTAAATCAACAGAAGAGTCGTGTACGTGTCAGTGCTGCACACAACATGCATCCTGAGATCACACAGCAGCATAGGTTAATAAGTGCTTAAAGTGGTTTAATGCTAGAACAGAATGCCATCCCAGTTGAAACAAAACGTACTCCCCATTTCACGTAAACAAAGCACAGGATTCAAAAAGAATACTGCAACAGAAATGCTCTTGTATGTAATAATGATTTGCATGACAGTAGCCCCGAGGGCGAGGCTAGTCGGTTTAACAGAATGAGAGACTATATTGCATTGGTTGTTGGTACCGGACAGTACTGTATGAACACACAGTGAACAATCCCAACTGCTAAAATGACTCACACACACCAAGAAGACCCCTTAAGCACTGATCAAATGTAAATCGTTAaagaatggcgccggaggggatgacTGCCGTTTTACATGCTCTTcaacaattgtgctattttgtgtgttttttcgcattgtttgtaacttattttgtacataatgttgatgcTAGCGTGTCTtgtgaaaagagcttctggataagaacagcgattactcacctcaaactggactaATATGTTTTCTTTATTGAGTCTGATGCAAAGGATATAAAGTTGCTCTCAGACAAAAGCCAAAATCCCTGTCGTTCGCATgaagaaaataaagaaatacaagGGGCGGAGATCAGGGTACCTTGTGAGAATTTGTAGGTGAGTGGATAACCCGGCTCTACCATCCATTCTATTGGCCAACATGAAATCACTGGAGAGTAAACTGtatgagctccgttcgagactatcctaccaacgtgACATTGAAAGAAgacacggataatatacagttggctgggttttccgtgcatcggcaggacagaacagctacatcCGTTAGacaaggggtgggggtgtgtgagaatttgtcaataacagctgctGCGAGATGTCTAAtattgaggtattgctcgcctgagttagtgtggcctacagcttatcatgaggtactccaTCTACCAAGAaggttttcatctatatttttcgtagccgtctatttaccaccacaaaccgacgctggcactaagaaaatgctcatccagaagcgacgctcctagtggccagggacttcaatgcaggcaaacttaaatccattttacctcatttctaccagcatgtcacatgagCAACCAAAAATGCTATACTACCTTTACCCCACATTCAGAGACGCGtataaagctctccctcgccaaccatttggcaaatctgaccttaattctatcctcctgattcctgcttacaagcaacaactaaagcaggaagtaccagtgactcgcccaatacggaagtggtcagatgatgcggatgctacgctacaggactcttttgctagcacagactggaatatgttctgggaggATGttctgttacatcctcagaaagcatgagctcctgagttgggaaaatcttgtgcaatacaccgacgcatgtcttgtattcaagatcctaaatggcctggctccccctccactcagtatttttgttcaacagaaaacccaaacatatggcagcagatccacaaggtctgccttgagaggtgactgtatagttcccttaaggaaaagcacctttagtaaatccgctttctctgtgagagcttcccatgtctggaatacactgccttcagacacacaactgcaccaccttatcacactttcacaaaaatgtatgaatacatggctaaaggtcaatctgATTTGTGATCATAATCCATAGCTGTGTATTGCCGTTTTccgtgttgtctgtagcttgtgaggtgtggaaacacttttatgaattttgtcttatgttgctctgtctgtatgctacgtcttgcttgtcctatgttgctctgcgtgtgctcactgctcaatgattgtctatattgtaattgtttttaataacctgcccagggactgcagttgaaatctgccacgctgatccttaacatgGGGGCACCTTAgggctgtgtgcttagtcccctcatgtactcccaGTTCATCCACGTCTGCGTGGCcaaacaactccaacaccatcattaagtttgctgacgacacagcggcggtaggcctgatcaccgacaacgatgagacagcctatagggaggaggacaagagacctggcagtgttgtgccaggataacaacctctccctcaacgtgagcaagacaaaggagatgattgtggactacaggaaaaggaggaccgagcacacccccattcacatcaactggGCTGTAGCGGAGTGGGTTAagagttaagttccttggtgtccacatcactaacaaactaacacggtccgaacacaccaagaaagttgtgaagaggacaTGACAATGCCTTtttcaccctcaggagactgaaaagatttggcatgggtcctcagatcctcaaaggttTCACAGCTTCACCATCGAGAGcctcctgaccggttgcatccccacctggtatggcaactgctcggcatctaatcgtaaggcactacagagagtagtgcgtacaacccagtacattactggtgccaagcttcctaccatccaggacctattaCACTAGgcagtgtcacaggaaggcccaacaaattgtcaaagactccagtcacccaagtcattgactgttctctctgcaaccgcacggcaagtggtaccggagcaccaagtctaggtccaaaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU577924 lncRNA upstream 18022 42548231 ~ 42549226 (+) True G509148
TU577850 lncRNA upstream 121811 42445230 ~ 42445437 (+) True G509080
TU577848 lncRNA upstream 123925 42443114 ~ 42443323 (+) True G509078
TU577847 lncRNA upstream 124664 42442366 ~ 42442584 (+) True G509077
TU577839 lncRNA upstream 130802 42436214 ~ 42436446 (+) True G509070
TU577939 lncRNA downstream 390 42570559 ~ 42573399 (+) True G509161
TU577941 lncRNA downstream 6384 42576553 ~ 42576898 (+) True G509163
TU577942 lncRNA downstream 8050 42578219 ~ 42588368 (+) True G509164
TU577966 lncRNA downstream 81462 42651631 ~ 42655499 (+) True LOC110525996
TU578041 lncRNA downstream 159751 42729920 ~ 42730149 (+) True G509252
XM_021606545.1 mRNA upstream 152140 42372531 ~ 42415108 (+) False stxbp1b
XM_021606548.1 mRNA upstream 152140 42372531 ~ 42415108 (+) True stxbp1b
XM_021606542.2 mRNA upstream 317982 42244505 ~ 42249266 (+) True LOC110525988
XM_021606540.2 mRNA upstream 423640 42139067 ~ 42143608 (+) False paxx
XM_036980149.1 mRNA downstream 33139 42603308 ~ 42643804 (+) False camsap1b
XM_036980147.1 mRNA downstream 33140 42603309 ~ 42645904 (+) False camsap1b
XM_036980148.1 mRNA downstream 33140 42603309 ~ 42645904 (+) True camsap1b
XM_021606561.2 mRNA downstream 75865 42646034 ~ 42651728 (+) False LOC110525996
XR_005052112.1 mRNA downstream 209092 42779261 ~ 42780791 (+) True LOC118964872
TU577295 other upstream 435308 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 1095840 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 1707726 40568726 ~ 40859522 (+) True fbxl17
TU574820 other upstream 2000819 40566067 ~ 40566429 (+) True G506285
TU574816 other upstream 2019735 40544863 ~ 40547513 (+) False G506281
TU579244 other downstream 1087299 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 2614270 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 2647558 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 3065420 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 3616831 46187000 ~ 46190292 (+) True LOC110526042

Expression Profile