RNA id: TU578299


Basic Information

Item Value
RNA id TU578299
length 229
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G509500
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42766120 ~ 42766348 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaaagtactagttacgctttgaatgcttagcaggacagaaaattgtccaattcacatacttatcaagagaacatccatggtcatccctaatgtctctgatctggcggactcactaaacaccaatgttttgtttgtaaattatgtctgagtgttggagtgtgtccctggctatctgtaaataaaaaaaaaacaagaaaattgtgccatctcgtttgcttaatataagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578061 lncRNA upstream 9149 42756766 ~ 42756971 (+) True G509272
TU578056 lncRNA upstream 14506 42751408 ~ 42751614 (+) True G509267
TU578055 lncRNA upstream 15852 42750031 ~ 42750268 (+) True G509266
TU578049 lncRNA upstream 22907 42742014 ~ 42743213 (+) True G509260
TU578045 lncRNA upstream 31263 42734594 ~ 42734857 (+) True G509256
TU578501 lncRNA downstream 204208 42970556 ~ 42970917 (+) True G509697
TU578504 lncRNA downstream 207426 42973774 ~ 42974022 (+) True G509700
TU578430 lncRNA downstream 224947 42991295 ~ 42992257 (+) True col27a1b
TU578523 lncRNA downstream 235384 43001732 ~ 43002009 (+) True G509719
TU578535 lncRNA downstream 257432 43023780 ~ 43023984 (+) True LOC118965079
XM_021606561.2 mRNA upstream 114392 42646034 ~ 42651728 (+) False LOC110525996
XM_036980147.1 mRNA upstream 120216 42603309 ~ 42645904 (+) False camsap1b
XM_036980148.1 mRNA upstream 120216 42603309 ~ 42645904 (+) True camsap1b
XM_036980149.1 mRNA upstream 122316 42603308 ~ 42643804 (+) False camsap1b
XM_021606548.1 mRNA upstream 351012 42372531 ~ 42415108 (+) True stxbp1b
XR_005052112.1 mRNA downstream 12913 42779261 ~ 42780791 (+) True LOC118964872
XM_021606571.2 mRNA downstream 43966 42810314 ~ 42825158 (+) True LOC110525999
XM_036981749.1 mRNA downstream 63463 42829811 ~ 42836106 (+) True LOC118965026
XM_021606572.2 mRNA downstream 87439 42853787 ~ 42992231 (+) False col27a1b
XR_005052415.1 mRNA downstream 257515 43023863 ~ 43024698 (+) False LOC118965079
TU577937 other upstream 195951 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 196736 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 634180 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 1294712 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 1906598 40568726 ~ 40859522 (+) True fbxl17
TU579244 other downstream 891120 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 2418091 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 2451379 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 2869241 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 3420652 46187000 ~ 46190292 (+) True LOC110526042

Expression Profile