RNA id: TU578689


Basic Information

Item Value
RNA id TU578689
length 212
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G509875
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43028774 ~ 43028985 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacacacacaggatacttcaaatcaaatcaaattttatttgtcacatacacatggttagcagatgttagtgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacaagtaatctagctaacaattccaaaactactaccttatagacacaagtgtaaggggataaagaatatgtacataaagatatatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578679 lncRNA downstream 25330 43003173 ~ 43003444 (-) True G509865
TU578678 lncRNA downstream 25730 43002601 ~ 43003044 (-) True G509864
TU578668 lncRNA downstream 39881 42988649 ~ 42988893 (-) True G509854
TU578367 lncRNA downstream 243809 42784729 ~ 42784965 (-) True G509564
TU578366 lncRNA downstream 244242 42784314 ~ 42784532 (-) True G509563
TU578696 lncRNA upstream 10756 43039741 ~ 43044581 (-) True G509882
TU578713 lncRNA upstream 43266 43072251 ~ 43073742 (-) True G509899
TU578726 lncRNA upstream 56864 43085849 ~ 43086123 (-) True G509912
TU578733 lncRNA upstream 61205 43090190 ~ 43090403 (-) True G509919
TU578749 lncRNA upstream 74782 43103767 ~ 43107120 (-) True G509933
XM_021606575.2 mRNA downstream 10255 43005570 ~ 43018519 (-) False LOC110526002
XM_036980150.1 mRNA downstream 10255 43005570 ~ 43018519 (-) False LOC110526002
XM_036980152.1 mRNA downstream 10255 43005570 ~ 43018519 (-) False LOC110526002
XM_036980153.1 mRNA downstream 10255 43005570 ~ 43018519 (-) True LOC110526002
XM_021606574.2 mRNA downstream 30916 42992049 ~ 42997858 (-) True zgc:101858
XM_021606577.2 mRNA upstream 660319 43689304 ~ 43813410 (-) True LOC110526003
XM_021606578.2 mRNA upstream 911805 43940790 ~ 43955256 (-) False prodhb
XM_036980157.1 mRNA upstream 911805 43940790 ~ 43955257 (-) False prodhb
XM_036980163.1 mRNA upstream 1016061 44045046 ~ 44099131 (-) True LOC110526006
XM_021606584.2 mRNA upstream 1181865 44210850 ~ 44271697 (-) False nf2a
TU578229 other downstream 382905 42643519 ~ 42645869 (-) True G509432
TU577801 other downstream 625554 42372441 ~ 42403220 (-) False G509034
TU577652 other downstream 883889 42144097 ~ 42144885 (-) True G508891
TU577033 other downstream 1207564 41820855 ~ 41821210 (-) True G508303
TU576567 other downstream 1589760 41434975 ~ 41439014 (-) True znf131
TU578716 other upstream 47707 43076692 ~ 43077157 (-) True G509902
TU578766 other upstream 93561 43122546 ~ 43123092 (-) True G509949
TU578769 other upstream 95596 43124581 ~ 43125387 (-) True G509952
TU579133 other upstream 494729 43523714 ~ 43524108 (-) True G510310
TU579749 other upstream 917353 43946338 ~ 43948389 (-) True prodhb

Expression Profile