RNA id: TU578696


Basic Information

Item Value
RNA id TU578696
length 413
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G509882
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43039741 ~ 43044581 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctgaaacacttcagcgagcaggcctttctaatcgacctggccggggtatcctggaaggatattgatctcatcccgtcagtagaggatgcctggatatttttaaaaaatgccttcctaaccatcttaaataaacatgccccattcaagaaatttagaaccaggaacagatatagcccttggttctccccagacctgactgcccttaaccaacacaaaaacatcctatggggttctgcattagcatcgaacagcccccgtgatatgcagctgttcagggaagctagaaaccattatacacaggcagttagaaaagccaaggctagctttttcaagcagaaatttgcttcctgcaacactaactcaaaaaagttctgggacactgtaaagtccatggagaataagaacacctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578689 lncRNA downstream 10756 43028774 ~ 43028985 (-) True G509875
TU578679 lncRNA downstream 36297 43003173 ~ 43003444 (-) True G509865
TU578678 lncRNA downstream 36697 43002601 ~ 43003044 (-) True G509864
TU578668 lncRNA downstream 50848 42988649 ~ 42988893 (-) True G509854
TU578367 lncRNA downstream 254776 42784729 ~ 42784965 (-) True G509564
TU578713 lncRNA upstream 27670 43072251 ~ 43073742 (-) True G509899
TU578726 lncRNA upstream 41268 43085849 ~ 43086123 (-) True G509912
TU578733 lncRNA upstream 45609 43090190 ~ 43090403 (-) True G509919
TU578749 lncRNA upstream 59186 43103767 ~ 43107120 (-) True G509933
TU578767 lncRNA upstream 79286 43123867 ~ 43124142 (-) True G509950
XM_021606575.2 mRNA downstream 21222 43005570 ~ 43018519 (-) False LOC110526002
XM_036980150.1 mRNA downstream 21222 43005570 ~ 43018519 (-) False LOC110526002
XM_036980152.1 mRNA downstream 21222 43005570 ~ 43018519 (-) False LOC110526002
XM_036980153.1 mRNA downstream 21222 43005570 ~ 43018519 (-) True LOC110526002
XM_021606574.2 mRNA downstream 41883 42992049 ~ 42997858 (-) True zgc:101858
XM_021606577.2 mRNA upstream 644723 43689304 ~ 43813410 (-) True LOC110526003
XM_021606578.2 mRNA upstream 896209 43940790 ~ 43955256 (-) False prodhb
XM_036980157.1 mRNA upstream 896209 43940790 ~ 43955257 (-) False prodhb
XM_036980163.1 mRNA upstream 1000465 44045046 ~ 44099131 (-) True LOC110526006
XM_021606584.2 mRNA upstream 1166269 44210850 ~ 44271697 (-) False nf2a
TU578229 other downstream 393872 42643519 ~ 42645869 (-) True G509432
TU577801 other downstream 636521 42372441 ~ 42403220 (-) False G509034
TU577652 other downstream 894856 42144097 ~ 42144885 (-) True G508891
TU577033 other downstream 1218531 41820855 ~ 41821210 (-) True G508303
TU576567 other downstream 1600727 41434975 ~ 41439014 (-) True znf131
TU578716 other upstream 32111 43076692 ~ 43077157 (-) True G509902
TU578766 other upstream 77965 43122546 ~ 43123092 (-) True G509949
TU578769 other upstream 80000 43124581 ~ 43125387 (-) True G509952
TU579133 other upstream 479133 43523714 ~ 43524108 (-) True G510310
TU579749 other upstream 901757 43946338 ~ 43948389 (-) True prodhb

Expression Profile