RNA id: TU578737


Basic Information

Item Value
RNA id TU578737
length 271
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G509923
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43093743 ~ 43094013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagcaaggtttatacaaatctccgtggttgaaaactaaatgttagtctaaaagaaatgtgagataatgtctagatgcttttaatagtggagatcaagtttataaattgcctgtttgggctgatgagacagtggattttgcagtcagatggaacagagtaaataggcattttaatgtcatagatttagccagtggtaacttgtggtatagacaccagctggaatgcggtgttaaccaatcagcattcagaattagacccacccgttgtataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578736 lncRNA upstream 268 43093248 ~ 43093475 (+) True G509922
TU578569 lncRNA upstream 19010 43074094 ~ 43074733 (+) True G509763
TU578546 lncRNA upstream 47481 43040908 ~ 43046262 (+) False G509741
TU578547 lncRNA upstream 47481 43040908 ~ 43046262 (+) True G509741
TU578545 lncRNA upstream 50747 43037037 ~ 43042996 (+) True G509740
TU578738 lncRNA downstream 208 43094221 ~ 43094515 (+) True G509924
TU578744 lncRNA downstream 14192 43108205 ~ 43108491 (+) True G509930
TU578746 lncRNA downstream 14762 43108775 ~ 43112219 (+) True G509931
TU578765 lncRNA downstream 28492 43122505 ~ 43123620 (+) True G509948
TU578785 lncRNA downstream 45597 43139610 ~ 43139843 (+) True G509968
XR_005052415.1 mRNA upstream 69045 43023863 ~ 43024698 (+) False LOC118965079
XM_021606572.2 mRNA upstream 101512 42853787 ~ 42992231 (+) False col27a1b
XM_036981749.1 mRNA upstream 257637 42829811 ~ 42836106 (+) True LOC118965026
XM_021606571.2 mRNA upstream 268585 42810314 ~ 42825158 (+) True LOC110525999
XR_005052112.1 mRNA upstream 312952 42779261 ~ 42780791 (+) True LOC118964872
XM_036980158.1 mRNA downstream 862164 43956177 ~ 43981885 (+) False LOC110526005
XM_036980159.1 mRNA downstream 862164 43956177 ~ 43981885 (+) False LOC110526005
XM_036980160.1 mRNA downstream 862164 43956177 ~ 43981885 (+) False LOC110526005
XM_036980161.1 mRNA downstream 862164 43956177 ~ 43981885 (+) False LOC110526005
XM_036980162.1 mRNA downstream 863029 43957042 ~ 43981885 (+) False LOC110526005
TU577937 other upstream 523574 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 524359 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 961803 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 1622335 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 2234221 40568726 ~ 40859522 (+) True fbxl17
TU579244 other downstream 563455 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 2090426 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 2123714 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 2541576 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 3092987 46187000 ~ 46190292 (+) True LOC110526042

Expression Profile