RNA id: TU578744


Basic Information

Item Value
RNA id TU578744
length 287
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G509930
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43108205 ~ 43108491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatgttttaatgggcaggtaccatcacgaatttgtcatgctcaaaattcaaactttactttgctcaaactatacctttgtcaacttgtgatctaaaatatgcaactggttacccaaaaaacaatttttgggatgtttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgttttaatgggcaggtaccatcacgaatttgtcatgctcaaaattcaagctttactttgctcaaactatacctttgtcatcttgtgatctaaaatatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578738 lncRNA upstream 13690 43094221 ~ 43094515 (+) True G509924
TU578737 lncRNA upstream 14192 43093743 ~ 43094013 (+) True G509923
TU578736 lncRNA upstream 14730 43093248 ~ 43093475 (+) True G509922
TU578569 lncRNA upstream 33472 43074094 ~ 43074733 (+) True G509763
TU578546 lncRNA upstream 61943 43040908 ~ 43046262 (+) False G509741
TU578746 lncRNA downstream 284 43108775 ~ 43112219 (+) True G509931
TU578765 lncRNA downstream 14014 43122505 ~ 43123620 (+) True G509948
TU578785 lncRNA downstream 31119 43139610 ~ 43139843 (+) True G509968
TU578788 lncRNA downstream 33117 43141608 ~ 43141901 (+) True G509971
TU578792 lncRNA downstream 34638 43143129 ~ 43143365 (+) True G509975
XR_005052415.1 mRNA upstream 83507 43023863 ~ 43024698 (+) False LOC118965079
XM_021606572.2 mRNA upstream 115974 42853787 ~ 42992231 (+) False col27a1b
XM_036981749.1 mRNA upstream 272099 42829811 ~ 42836106 (+) True LOC118965026
XM_021606571.2 mRNA upstream 283047 42810314 ~ 42825158 (+) True LOC110525999
XR_005052112.1 mRNA upstream 327414 42779261 ~ 42780791 (+) True LOC118964872
XM_036980158.1 mRNA downstream 847686 43956177 ~ 43981885 (+) False LOC110526005
XM_036980159.1 mRNA downstream 847686 43956177 ~ 43981885 (+) False LOC110526005
XM_036980160.1 mRNA downstream 847686 43956177 ~ 43981885 (+) False LOC110526005
XM_036980161.1 mRNA downstream 847686 43956177 ~ 43981885 (+) False LOC110526005
XM_036980162.1 mRNA downstream 848551 43957042 ~ 43981885 (+) False LOC110526005
TU577937 other upstream 538036 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 538821 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 976265 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 1636797 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 2248683 40568726 ~ 40859522 (+) True fbxl17
TU579244 other downstream 548977 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 2075948 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 2109236 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 2527098 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 3078509 46187000 ~ 46190292 (+) True LOC110526042

Expression Profile