RNA id: TU578746


Basic Information

Item Value
RNA id TU578746
length 1174
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G509931
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43108775 ~ 43112219 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggacaagagtccatcagtcaattagatatcattctgaccaccaaactgatacaaactgacaccaaacccactttttccaactcgtttagtagccaactattacatacttcagagctggcccaaaaatcacaacgccttcggttcaaaccataaaaaaaccataaaacacgtagttacgttctagctgcgggtccatttcttatgttatgtgttggcctagctgaggcgaccccgaatcccaagtttcggctcgataggtcatttggtgtccgagaaaaaccctaattggtgctgaaaatccactattttccatgacttgctacggggtccttgaatgagctatcggacagaaacgttggggtctgtctatatgggccgagacgttcgcaatgcacctagtcttgcgactctgggacatttctaaatgtcgtcattttcgtgatgcaaaaatgaattgaagttattgcaaatgtacgaggctgtttctcggtccgagaaccttctagagccacgtaactcaccacgcaccatcgacgggaggtctagaacaggtttctaaagtttcggaactctaggtctgacggttcttttttagctccaacaaagctaactattgcagccactgtctgtctctacgcaccccctccttccaagttgtgttttagtgtgattttttttcctttgaatttttttgggaaaaatgactgatttacagttcatgggggttgcctaatcacacatatgaagttttggaaagatcagacttttttaacccttcgaaacagcccctgagacaccaattatggcacgtccggttggcacaggaagttataaatcaacacatatcctcattggggtatgctgttacagaatcctgagttttaagtccttacgttaagaactgactgatttacacaggcttgaatgcactatgtctatcaaactgcaggcagggtatgggtaaacacttttagggtgattttaaccacttccggttggtccaggaagcttagattcgacacaggtagacctcatagtggcctgatggactggtaccgaagacaggttcatacggcattcataacccatataggcttttgtggtgcaggctatgtattcctatggggagagatgtcactgtaatctgtgagatcaaaaaaccctgttttact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578744 lncRNA upstream 284 43108205 ~ 43108491 (+) True G509930
TU578738 lncRNA upstream 14260 43094221 ~ 43094515 (+) True G509924
TU578737 lncRNA upstream 14762 43093743 ~ 43094013 (+) True G509923
TU578736 lncRNA upstream 15300 43093248 ~ 43093475 (+) True G509922
TU578569 lncRNA upstream 34042 43074094 ~ 43074733 (+) True G509763
TU578765 lncRNA downstream 10286 43122505 ~ 43123620 (+) True G509948
TU578785 lncRNA downstream 27391 43139610 ~ 43139843 (+) True G509968
TU578788 lncRNA downstream 29389 43141608 ~ 43141901 (+) True G509971
TU578792 lncRNA downstream 30910 43143129 ~ 43143365 (+) True G509975
TU578802 lncRNA downstream 37991 43150210 ~ 43150470 (+) True G509985
XR_005052415.1 mRNA upstream 84077 43023863 ~ 43024698 (+) False LOC118965079
XM_021606572.2 mRNA upstream 116544 42853787 ~ 42992231 (+) False col27a1b
XM_036981749.1 mRNA upstream 272669 42829811 ~ 42836106 (+) True LOC118965026
XM_021606571.2 mRNA upstream 283617 42810314 ~ 42825158 (+) True LOC110525999
XR_005052112.1 mRNA upstream 327984 42779261 ~ 42780791 (+) True LOC118964872
XM_036980158.1 mRNA downstream 843958 43956177 ~ 43981885 (+) False LOC110526005
XM_036980159.1 mRNA downstream 843958 43956177 ~ 43981885 (+) False LOC110526005
XM_036980160.1 mRNA downstream 843958 43956177 ~ 43981885 (+) False LOC110526005
XM_036980161.1 mRNA downstream 843958 43956177 ~ 43981885 (+) False LOC110526005
XM_036980162.1 mRNA downstream 844823 43957042 ~ 43981885 (+) False LOC110526005
TU577937 other upstream 538606 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 539391 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 976835 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 1637367 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 2249253 40568726 ~ 40859522 (+) True fbxl17
TU579244 other downstream 545249 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 2072220 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 2105508 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 2523370 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 3074781 46187000 ~ 46190292 (+) True LOC110526042

Expression Profile