RNA id: TU578810


Basic Information

Item Value
RNA id TU578810
length 207
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G509993
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43154259 ~ 43154465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtcaaaagagcaattaatgaaaaaaatatcagaattgggctgcctgtgtaaacgcagccatagtcCTTTATCAAGCTTCCGGATACACTGGCAATTATGTTCGGCATGGTGGGCTAGGGAAGCTGAGACTCTTTGTGCTTATGGTGCTGGGCTTGTCCTGTCTGCAGTGAACGACCAGCTGGATAAGATTCTGCCCGAAAGTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578806 lncRNA downstream 1970 43151987 ~ 43152289 (-) True G509989
TU578793 lncRNA downstream 10778 43143256 ~ 43143481 (-) True G509976
TU578791 lncRNA downstream 11370 43142679 ~ 43142889 (-) True G509974
TU578784 lncRNA downstream 14850 43139194 ~ 43139409 (-) True G509967
TU578767 lncRNA downstream 30117 43123867 ~ 43124142 (-) True G509950
TU578830 lncRNA upstream 36514 43190979 ~ 43191295 (-) True G510012
TU578850 lncRNA upstream 54803 43209268 ~ 43210135 (-) True G510032
TU578854 lncRNA upstream 59069 43213534 ~ 43213833 (-) True G510036
TU578924 lncRNA upstream 104733 43259198 ~ 43259773 (-) True G510105
TU578934 lncRNA upstream 223308 43377773 ~ 43378044 (-) True G510115
XM_021606575.2 mRNA downstream 135740 43005570 ~ 43018519 (-) False LOC110526002
XM_036980150.1 mRNA downstream 135740 43005570 ~ 43018519 (-) False LOC110526002
XM_036980152.1 mRNA downstream 135740 43005570 ~ 43018519 (-) False LOC110526002
XM_036980153.1 mRNA downstream 135740 43005570 ~ 43018519 (-) True LOC110526002
XM_021606574.2 mRNA downstream 156401 42992049 ~ 42997858 (-) True zgc:101858
XM_021606577.2 mRNA upstream 534839 43689304 ~ 43813410 (-) True LOC110526003
XM_021606578.2 mRNA upstream 786325 43940790 ~ 43955256 (-) False prodhb
XM_036980157.1 mRNA upstream 786325 43940790 ~ 43955257 (-) False prodhb
XM_036980163.1 mRNA upstream 890581 44045046 ~ 44099131 (-) True LOC110526006
XM_021606584.2 mRNA upstream 1056385 44210850 ~ 44271697 (-) False nf2a
TU578769 other downstream 28872 43124581 ~ 43125387 (-) True G509952
TU578766 other downstream 31167 43122546 ~ 43123092 (-) True G509949
TU578716 other downstream 77102 43076692 ~ 43077157 (-) True G509902
TU578229 other downstream 508390 42643519 ~ 42645869 (-) True G509432
TU577801 other downstream 751039 42372441 ~ 42403220 (-) False G509034
TU579133 other upstream 369249 43523714 ~ 43524108 (-) True G510310
TU579749 other upstream 791873 43946338 ~ 43948389 (-) True prodhb
TU580173 other upstream 1054873 44209338 ~ 44210665 (-) False nf2a
TU580171 other upstream 1055000 44209465 ~ 44211823 (-) False nf2a
TU580172 other upstream 1055000 44209465 ~ 44210665 (-) True nf2a

Expression Profile