RNA id: TU578873


Basic Information

Item Value
RNA id TU578873
length 291
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G510054
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43226777 ~ 43227067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtaatacatgtatcactagccactttaactatgccactttgtttacatactcatctcatatgtatatactgtactcgatgccatctactgtatcttgcctatgctgctctgtaccatcactcattcatatatccttatgtacatattctttatccccttacactgtgtacaagacagtagttttggaattgttagttagattacttgttggttattactgcattgtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578851 lncRNA upstream 14535 43211970 ~ 43212242 (+) True G510033
TU578832 lncRNA upstream 26541 43195153 ~ 43200236 (+) True G510014
TU578831 lncRNA upstream 32126 43194430 ~ 43194651 (+) True G510013
TU578829 lncRNA upstream 35482 43190897 ~ 43191295 (+) True G510011
TU578814 lncRNA upstream 69007 43157483 ~ 43157770 (+) True G509997
TU578919 lncRNA downstream 30301 43257368 ~ 43257656 (+) True G510100
TU578923 lncRNA downstream 32323 43259390 ~ 43259619 (+) True G510104
TU578930 lncRNA downstream 35453 43262520 ~ 43263158 (+) True G510111
TU578933 lncRNA downstream 144551 43371618 ~ 43372105 (+) True G510114
TU578949 lncRNA downstream 166265 43393332 ~ 43393819 (+) True G510128
XR_005052415.1 mRNA upstream 202079 43023863 ~ 43024698 (+) False LOC118965079
XM_021606572.2 mRNA upstream 234546 42853787 ~ 42992231 (+) False col27a1b
XM_036981749.1 mRNA upstream 390671 42829811 ~ 42836106 (+) True LOC118965026
XM_021606571.2 mRNA upstream 401619 42810314 ~ 42825158 (+) True LOC110525999
XR_005052112.1 mRNA upstream 445986 42779261 ~ 42780791 (+) True LOC118964872
XM_036980158.1 mRNA downstream 729110 43956177 ~ 43981885 (+) False LOC110526005
XM_036980159.1 mRNA downstream 729110 43956177 ~ 43981885 (+) False LOC110526005
XM_036980160.1 mRNA downstream 729110 43956177 ~ 43981885 (+) False LOC110526005
XM_036980161.1 mRNA downstream 729110 43956177 ~ 43981885 (+) False LOC110526005
XM_036980162.1 mRNA downstream 729975 43957042 ~ 43981885 (+) False LOC110526005
TU577937 other upstream 656608 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 657393 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 1094837 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 1755369 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 2367255 40568726 ~ 40859522 (+) True fbxl17
TU579244 other downstream 430401 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 1957372 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 1990660 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 2408522 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 2959933 46187000 ~ 46190292 (+) True LOC110526042

Expression Profile