RNA id: TU578935


Basic Information

Item Value
RNA id TU578935
length 506
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G510116
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43379726 ~ 43380231 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttatctctgggaccctttggatgataactcagagcaagatttcagaatgtaagtacacatttcaccatcAGAGGTGAATTCATCAAACCTATCGCGGTTaaaacgtttttttgttgtttttgttgtcaaacaatgccatttttttccgcagtaatagctactgaaaATTGAACAGTGCCGttaaattaacaataatttaagctttcagctgatataagacacttatatgtaccaacatttgttttttctctaaaatctgcgatggTGACACAAGACGTCATttactgcatgatttacaactgtcctgtTGACGAGTAGACGATCCCTAAGAAGTGGCTTTAACAACTTTCAGTGGGCACCCACATGGGTGCCTTTCAGAACCCCTTTTGAAAATCATTctgttttgtttggttgtcagtgattttcttttttaatttcCCTTTGTTGTGAGCGACATAAGACTCACCCACTTaacactcacccactcctccgttgacatgacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578934 lncRNA downstream 1682 43377773 ~ 43378044 (-) True G510115
TU578924 lncRNA downstream 119953 43259198 ~ 43259773 (-) True G510105
TU578854 lncRNA downstream 165893 43213534 ~ 43213833 (-) True G510036
TU578850 lncRNA downstream 169591 43209268 ~ 43210135 (-) True G510032
TU578830 lncRNA downstream 188431 43190979 ~ 43191295 (-) True G510012
TU578938 lncRNA upstream 3816 43384047 ~ 43389056 (-) True G510118
TU578959 lncRNA upstream 17374 43397605 ~ 43397872 (-) True G510138
TU578983 lncRNA upstream 32527 43412758 ~ 43412973 (-) True G510162
TU579035 lncRNA upstream 76801 43457032 ~ 43457484 (-) True G510214
TU579042 lncRNA upstream 80463 43460694 ~ 43460923 (-) True G510221
XM_021606575.2 mRNA downstream 361207 43005570 ~ 43018519 (-) False LOC110526002
XM_036980150.1 mRNA downstream 361207 43005570 ~ 43018519 (-) False LOC110526002
XM_036980152.1 mRNA downstream 361207 43005570 ~ 43018519 (-) False LOC110526002
XM_036980153.1 mRNA downstream 361207 43005570 ~ 43018519 (-) True LOC110526002
XM_021606574.2 mRNA downstream 381868 42992049 ~ 42997858 (-) True zgc:101858
XM_021606577.2 mRNA upstream 309073 43689304 ~ 43813410 (-) True LOC110526003
XM_021606578.2 mRNA upstream 560559 43940790 ~ 43955256 (-) False prodhb
XM_036980157.1 mRNA upstream 560559 43940790 ~ 43955257 (-) False prodhb
XM_036980163.1 mRNA upstream 664815 44045046 ~ 44099131 (-) True LOC110526006
XM_021606584.2 mRNA upstream 830619 44210850 ~ 44271697 (-) False nf2a
TU578769 other downstream 254339 43124581 ~ 43125387 (-) True G509952
TU578766 other downstream 256634 43122546 ~ 43123092 (-) True G509949
TU578716 other downstream 302569 43076692 ~ 43077157 (-) True G509902
TU578229 other downstream 733857 42643519 ~ 42645869 (-) True G509432
TU577801 other downstream 976506 42372441 ~ 42403220 (-) False G509034
TU579133 other upstream 143483 43523714 ~ 43524108 (-) True G510310
TU579749 other upstream 566107 43946338 ~ 43948389 (-) True prodhb
TU580173 other upstream 829107 44209338 ~ 44210665 (-) False nf2a
TU580171 other upstream 829234 44209465 ~ 44211823 (-) False nf2a
TU580172 other upstream 829234 44209465 ~ 44210665 (-) True nf2a

Expression Profile