RNA id: TU578949


Basic Information

Item Value
RNA id TU578949
length 488
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G510128
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43393332 ~ 43393819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACAACATTCAACAAgcgagacataaactgaacaagttccacagacatgtgactaacagaaattgaatgtgtccctgaacaaagggggggtcaaaatcaaaagtaacaccagctgtggccaccagctgcattaagtaccgcagtgcatctcctcttcatggactgcaccagatttgccagctcttgatgtgagatgttaccccactcttccaccaaggcacttgcaagttcccagacatttctggggggaatggccctagccattgtaccacatgagggaggatgcaACACacaacgttgagattgcctgcaatttttattttacctttttttaactagacaagtcagttaagaacaaattcttattttcaatgacgacctaggaacagtgggttaactgcctgttcgggggcagaacgacagcaaTGACAACAAGTTCAGTCCGATGCTGTGACAAACCGTTCCAGATCATGACGgaacctccacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578933 lncRNA upstream 21227 43371618 ~ 43372105 (+) True G510114
TU578930 lncRNA upstream 130174 43262520 ~ 43263158 (+) True G510111
TU578923 lncRNA upstream 133713 43259390 ~ 43259619 (+) True G510104
TU578919 lncRNA upstream 135676 43257368 ~ 43257656 (+) True G510100
TU578873 lncRNA upstream 166265 43226777 ~ 43227067 (+) True G510054
TU578960 lncRNA downstream 5160 43398979 ~ 43399713 (+) True G510139
TU578971 lncRNA downstream 11165 43404984 ~ 43405213 (+) True G510150
TU578973 lncRNA downstream 12627 43406446 ~ 43406796 (+) True G510152
TU579089 lncRNA downstream 98330 43492149 ~ 43492352 (+) True G510268
TU579131 lncRNA downstream 127829 43521648 ~ 43522123 (+) True G510308
XR_005052415.1 mRNA upstream 368634 43023863 ~ 43024698 (+) False LOC118965079
XM_021606572.2 mRNA upstream 401101 42853787 ~ 42992231 (+) False col27a1b
XM_036981749.1 mRNA upstream 557226 42829811 ~ 42836106 (+) True LOC118965026
XM_021606571.2 mRNA upstream 568174 42810314 ~ 42825158 (+) True LOC110525999
XR_005052112.1 mRNA upstream 612541 42779261 ~ 42780791 (+) True LOC118964872
XM_036980158.1 mRNA downstream 562358 43956177 ~ 43981885 (+) False LOC110526005
XM_036980159.1 mRNA downstream 562358 43956177 ~ 43981885 (+) False LOC110526005
XM_036980160.1 mRNA downstream 562358 43956177 ~ 43981885 (+) False LOC110526005
XM_036980161.1 mRNA downstream 562358 43956177 ~ 43981885 (+) False LOC110526005
XM_036980162.1 mRNA downstream 563223 43957042 ~ 43981885 (+) False LOC110526005
TU577937 other upstream 823163 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 823948 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 1261392 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 1921924 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 2533810 40568726 ~ 40859522 (+) True fbxl17
TU579244 other downstream 263649 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 1790620 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 1823908 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 2241770 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 2793181 46187000 ~ 46190292 (+) True LOC110526042

Expression Profile