RNA id: TU579035


Basic Information

Item Value
RNA id TU579035
length 453
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G510214
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43457032 ~ 43457484 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGCTATAGGACGCCCACAAGCCTCAGAAGACTCGTCAGAACTTAGCCCGGTaccagtaaaaaaataaatatggaaGAGCTACAGTGAGCTACAAAAActttgggacagtgacacatttgttgCTGTTTTGGCTctgcactttggatttgaaatgattcaATGACTTTAAGGGTTAAAGTGTACACTGGCAGCTTTAATTTcgggtgaactgtttagaaattacagcactttttgtacatagtcccctcatttctgaagacaaagttTTGGAACAAATGAACTTATATGCGTAttgaagtagtcaaaagtttagtattaggtcccatattcctagcatggaATAACTAAATCAAGCAAATGACATGTAAGATGCAAAATCCTgtaggaaaatctggttcagtctgctttccatcagacactgggagatgtaTTCATCTGATGAAATTACGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578983 lncRNA downstream 44059 43412758 ~ 43412973 (-) True G510162
TU578959 lncRNA downstream 59160 43397605 ~ 43397872 (-) True G510138
TU578938 lncRNA downstream 67976 43384047 ~ 43389056 (-) True G510118
TU578935 lncRNA downstream 76801 43379726 ~ 43380231 (-) True G510116
TU578934 lncRNA downstream 78988 43377773 ~ 43378044 (-) True G510115
TU579042 lncRNA upstream 3210 43460694 ~ 43460923 (-) True G510221
TU579127 lncRNA upstream 61722 43519206 ~ 43519463 (-) True G510304
TU579145 lncRNA upstream 76429 43533913 ~ 43534189 (-) True G510322
TU579798 lncRNA upstream 541284 43998768 ~ 43999038 (-) True G510947
TU579802 lncRNA upstream 544409 44001893 ~ 44002194 (-) True G510951
XM_021606575.2 mRNA downstream 438513 43005570 ~ 43018519 (-) False LOC110526002
XM_036980150.1 mRNA downstream 438513 43005570 ~ 43018519 (-) False LOC110526002
XM_036980152.1 mRNA downstream 438513 43005570 ~ 43018519 (-) False LOC110526002
XM_036980153.1 mRNA downstream 438513 43005570 ~ 43018519 (-) True LOC110526002
XM_021606574.2 mRNA downstream 459174 42992049 ~ 42997858 (-) True zgc:101858
XM_021606577.2 mRNA upstream 231820 43689304 ~ 43813410 (-) True LOC110526003
XM_021606578.2 mRNA upstream 483306 43940790 ~ 43955256 (-) False prodhb
XM_036980157.1 mRNA upstream 483306 43940790 ~ 43955257 (-) False prodhb
XM_036980163.1 mRNA upstream 587562 44045046 ~ 44099131 (-) True LOC110526006
XM_021606584.2 mRNA upstream 753366 44210850 ~ 44271697 (-) False nf2a
TU578769 other downstream 331645 43124581 ~ 43125387 (-) True G509952
TU578766 other downstream 333940 43122546 ~ 43123092 (-) True G509949
TU578716 other downstream 379875 43076692 ~ 43077157 (-) True G509902
TU578229 other downstream 811163 42643519 ~ 42645869 (-) True G509432
TU577801 other downstream 1053812 42372441 ~ 42403220 (-) False G509034
TU579133 other upstream 66230 43523714 ~ 43524108 (-) True G510310
TU579749 other upstream 488854 43946338 ~ 43948389 (-) True prodhb
TU580173 other upstream 751854 44209338 ~ 44210665 (-) False nf2a
TU580171 other upstream 751981 44209465 ~ 44211823 (-) False nf2a
TU580172 other upstream 751981 44209465 ~ 44210665 (-) True nf2a

Expression Profile