RNA id: TU579089


Basic Information

Item Value
RNA id TU579089
length 204
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G510268
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43492149 ~ 43492352 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccacatgaccttctcccattcctgctctggatcatccagatggtcattggcaaacttctgacgggcctggacatgcgctggcttgagcagggggaccttgcgtgcgctgcaggattttaatccaagacggcgtagtgtgttactaatggttttctttgagactgtggtcccagctctcttcaggtcattgaccaggtcctgccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578973 lncRNA upstream 85353 43406446 ~ 43406796 (+) True G510152
TU578971 lncRNA upstream 86936 43404984 ~ 43405213 (+) True G510150
TU578960 lncRNA upstream 92436 43398979 ~ 43399713 (+) True G510139
TU578949 lncRNA upstream 98330 43393332 ~ 43393819 (+) True G510128
TU578933 lncRNA upstream 120044 43371618 ~ 43372105 (+) True G510114
TU579131 lncRNA downstream 29296 43521648 ~ 43522123 (+) True G510308
TU579134 lncRNA downstream 32271 43524623 ~ 43524849 (+) True G510311
TU579147 lncRNA downstream 42489 43534841 ~ 43535151 (+) True G510324
TU579451 lncRNA downstream 445483 43937835 ~ 43981829 (+) True LOC110526005
TU579782 lncRNA downstream 497600 43989952 ~ 43990487 (+) True G510932
XR_005052415.1 mRNA upstream 467451 43023863 ~ 43024698 (+) False LOC118965079
XM_021606572.2 mRNA upstream 499918 42853787 ~ 42992231 (+) False col27a1b
XM_036981749.1 mRNA upstream 656043 42829811 ~ 42836106 (+) True LOC118965026
XM_021606571.2 mRNA upstream 666991 42810314 ~ 42825158 (+) True LOC110525999
XR_005052112.1 mRNA upstream 711358 42779261 ~ 42780791 (+) True LOC118964872
XM_036980158.1 mRNA downstream 463825 43956177 ~ 43981885 (+) False LOC110526005
XM_036980159.1 mRNA downstream 463825 43956177 ~ 43981885 (+) False LOC110526005
XM_036980160.1 mRNA downstream 463825 43956177 ~ 43981885 (+) False LOC110526005
XM_036980161.1 mRNA downstream 463825 43956177 ~ 43981885 (+) False LOC110526005
XM_036980162.1 mRNA downstream 464690 43957042 ~ 43981885 (+) False LOC110526005
TU577937 other upstream 921980 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 922765 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 1360209 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 2020741 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 2632627 40568726 ~ 40859522 (+) True fbxl17
TU579244 other downstream 165116 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 1692087 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 1725375 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 2143237 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 2694648 46187000 ~ 46190292 (+) True LOC110526042

Expression Profile