RNA id: TU579131


Basic Information

Item Value
RNA id TU579131
length 476
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G510308
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43521648 ~ 43522123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactatacatgaacaaactaacgaaaaaacaagaaacgtgagaactcaaaacagccctgtctggtgcaaacacaaaaacaggaacaatcacccacaaacacacagtgaaacccaggctacctaagtatgattctcaatcagagacaactaatgacacctgcctctgattgagaaccatactaggccgaaaacatagaactgccccaaaacatagaaaaacaaacatagactgcccacccaactcacgccctgaccatactaaataaatacaaaaacaaaggaaatagaggtcagaacgtgacagtacccccccccaaaggtgcggactccggccgcaaaaccttgacctataggggagggtctgggtgggcgtctgtccgcggtggcggctctggcgcgggacgcggaccccacttccccattgtctcagtccgccttattgtccgcctccgtggcttactcaccatgcccacccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU579089 lncRNA upstream 29296 43492149 ~ 43492352 (+) True G510268
TU578973 lncRNA upstream 114852 43406446 ~ 43406796 (+) True G510152
TU578971 lncRNA upstream 116435 43404984 ~ 43405213 (+) True G510150
TU578960 lncRNA upstream 121935 43398979 ~ 43399713 (+) True G510139
TU578949 lncRNA upstream 127829 43393332 ~ 43393819 (+) True G510128
TU579134 lncRNA downstream 2500 43524623 ~ 43524849 (+) True G510311
TU579147 lncRNA downstream 12718 43534841 ~ 43535151 (+) True G510324
TU579451 lncRNA downstream 415712 43937835 ~ 43981829 (+) True LOC110526005
TU579782 lncRNA downstream 467829 43989952 ~ 43990487 (+) True G510932
TU579788 lncRNA downstream 470888 43993011 ~ 43995124 (+) True LOC118964874
XR_005052415.1 mRNA upstream 496950 43023863 ~ 43024698 (+) False LOC118965079
XM_021606572.2 mRNA upstream 529417 42853787 ~ 42992231 (+) False col27a1b
XM_036981749.1 mRNA upstream 685542 42829811 ~ 42836106 (+) True LOC118965026
XM_021606571.2 mRNA upstream 696490 42810314 ~ 42825158 (+) True LOC110525999
XR_005052112.1 mRNA upstream 740857 42779261 ~ 42780791 (+) True LOC118964872
XM_036980158.1 mRNA downstream 434054 43956177 ~ 43981885 (+) False LOC110526005
XM_036980159.1 mRNA downstream 434054 43956177 ~ 43981885 (+) False LOC110526005
XM_036980160.1 mRNA downstream 434054 43956177 ~ 43981885 (+) False LOC110526005
XM_036980161.1 mRNA downstream 434054 43956177 ~ 43981885 (+) False LOC110526005
XM_036980162.1 mRNA downstream 434919 43957042 ~ 43981885 (+) False LOC110526005
TU577937 other upstream 951479 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 952264 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 1389708 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 2050240 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 2662126 40568726 ~ 40859522 (+) True fbxl17
TU579244 other downstream 135345 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 1662316 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 1695604 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 2113466 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 2664877 46187000 ~ 46190292 (+) True LOC110526042

Expression Profile