RNA id: TU579147


Basic Information

Item Value
RNA id TU579147
length 311
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G510324
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43534841 ~ 43535151 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtagaacgacatatattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatctacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU579134 lncRNA upstream 9992 43524623 ~ 43524849 (+) True G510311
TU579131 lncRNA upstream 12718 43521648 ~ 43522123 (+) True G510308
TU579089 lncRNA upstream 42489 43492149 ~ 43492352 (+) True G510268
TU578973 lncRNA upstream 128045 43406446 ~ 43406796 (+) True G510152
TU578971 lncRNA upstream 129628 43404984 ~ 43405213 (+) True G510150
TU579451 lncRNA downstream 402684 43937835 ~ 43981829 (+) True LOC110526005
TU579782 lncRNA downstream 454801 43989952 ~ 43990487 (+) True G510932
TU579788 lncRNA downstream 457860 43993011 ~ 43995124 (+) True LOC118964874
TU579797 lncRNA downstream 463632 43998783 ~ 43998991 (+) True G510946
TU579801 lncRNA downstream 466742 44001893 ~ 44002194 (+) True G510950
XR_005052415.1 mRNA upstream 510143 43023863 ~ 43024698 (+) False LOC118965079
XM_021606572.2 mRNA upstream 542610 42853787 ~ 42992231 (+) False col27a1b
XM_036981749.1 mRNA upstream 698735 42829811 ~ 42836106 (+) True LOC118965026
XM_021606571.2 mRNA upstream 709683 42810314 ~ 42825158 (+) True LOC110525999
XR_005052112.1 mRNA upstream 754050 42779261 ~ 42780791 (+) True LOC118964872
XM_036980158.1 mRNA downstream 421026 43956177 ~ 43981885 (+) False LOC110526005
XM_036980159.1 mRNA downstream 421026 43956177 ~ 43981885 (+) False LOC110526005
XM_036980160.1 mRNA downstream 421026 43956177 ~ 43981885 (+) False LOC110526005
XM_036980161.1 mRNA downstream 421026 43956177 ~ 43981885 (+) False LOC110526005
XM_036980162.1 mRNA downstream 421891 43957042 ~ 43981885 (+) False LOC110526005
TU577937 other upstream 964672 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 965457 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 1402901 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 2063433 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 2675319 40568726 ~ 40859522 (+) True fbxl17
TU579244 other downstream 122317 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 1649288 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 1682576 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 2100438 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 2651849 46187000 ~ 46190292 (+) True LOC110526042

Expression Profile