RNA id: TU579782


Basic Information

Item Value
RNA id TU579782
length 485
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G510932
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43989952 ~ 43990487 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaccaaaatgcagcgtggttgttattcatgttttttaattaagaaaactatacatgaataaactaacaaaacaataaatgtgagaaaacctaaacagcctatctggtgacaacaaacacaaagacaggaacaatcacccacgaaacactcaaagaatatggctgcctaaatatggttcccaatcagagacaacgataaacacctgcctctgattgagaaccaatacctaacaaaaaccccaagacaaaacacaccacacacaaaacccatgtcacaccctggcctgaccaaattaataaagaaaacacaaaatactaagaccaggacATGACAATAGGTGTCtatttagactgtaaactctccttccagactcatattaaacatctaaatccaaaattaaatctagaatcagcttcctagaatcagcttcctagaAAGCATCcttcatccttcactcatgctgccaacaataccctcgtaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU579451 lncRNA upstream 8123 43937835 ~ 43981829 (+) True LOC110526005
TU579147 lncRNA upstream 454801 43534841 ~ 43535151 (+) True G510324
TU579134 lncRNA upstream 465103 43524623 ~ 43524849 (+) True G510311
TU579131 lncRNA upstream 467829 43521648 ~ 43522123 (+) True G510308
TU579089 lncRNA upstream 497600 43492149 ~ 43492352 (+) True G510268
TU579788 lncRNA downstream 2524 43993011 ~ 43995124 (+) True LOC118964874
TU579797 lncRNA downstream 8296 43998783 ~ 43998991 (+) True G510946
TU579801 lncRNA downstream 11406 44001893 ~ 44002194 (+) True G510950
TU579837 lncRNA downstream 39203 44029690 ~ 44029918 (+) True G510986
TU579881 lncRNA downstream 99639 44090126 ~ 44090455 (+) True G511030
XM_036980158.1 mRNA upstream 8067 43956177 ~ 43981885 (+) False LOC110526005
XM_036980159.1 mRNA upstream 8067 43956177 ~ 43981885 (+) False LOC110526005
XM_036980160.1 mRNA upstream 8067 43956177 ~ 43981885 (+) False LOC110526005
XM_036980161.1 mRNA upstream 8067 43956177 ~ 43981885 (+) False LOC110526005
XM_036980162.1 mRNA upstream 8067 43957042 ~ 43981885 (+) False LOC110526005
XR_005052113.1 mRNA downstream 2346 43992833 ~ 43995155 (+) False LOC118964874
XR_002473856.2 mRNA downstream 268609 44259096 ~ 44260124 (+) True LOC110526008
XM_021606586.2 mRNA downstream 294365 44284852 ~ 44295238 (+) False LOC110526009
XM_036980166.1 mRNA downstream 294365 44284852 ~ 44295238 (+) True LOC110526009
XM_021606590.2 mRNA downstream 305127 44295614 ~ 44309360 (+) True LOC110526012
TU579244 other upstream 331459 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 1419783 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 1420568 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 1858012 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 2518544 41469551 ~ 41471408 (+) True G507768
TU581131 other downstream 1193952 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 1227240 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 1645102 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 2196513 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 2369469 46359956 ~ 46360585 (+) True G513501

Expression Profile