RNA id: TU580051


Basic Information

Item Value
RNA id TU580051
length 229
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G511194
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44205360 ~ 44205588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttgactttttccaaatgttgttacattacaggcttattcaaaaatgtattcaaacattttttttcctCAGCTAtctacacaccccataatgacaaagcacattttttacaattttttaaaactattttctacgttgtagaataacagtgaagccatcaaaactatgaaataacacatatggaatcatgtagtaaccaaaaaagtgtcaaacaaatatttcagattctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU579881 lncRNA upstream 114905 44090126 ~ 44090455 (+) True G511030
TU579837 lncRNA upstream 175442 44029690 ~ 44029918 (+) True G510986
TU579801 lncRNA upstream 203166 44001893 ~ 44002194 (+) True G510950
TU579797 lncRNA upstream 206369 43998783 ~ 43998991 (+) True G510946
TU579788 lncRNA upstream 210236 43993011 ~ 43995124 (+) True LOC118964874
TU580054 lncRNA downstream 4185 44209773 ~ 44210822 (+) False G511197
TU580055 lncRNA downstream 4566 44210154 ~ 44211918 (+) True G511197
TU580110 lncRNA downstream 68829 44274417 ~ 44274816 (+) True G511247
TU580112 lncRNA downstream 72260 44277848 ~ 44278307 (+) True G511249
TU580124 lncRNA downstream 78663 44284251 ~ 44284595 (+) True G511256
XR_005052113.1 mRNA upstream 210205 43992833 ~ 43995155 (+) False LOC118964874
XM_036980159.1 mRNA upstream 223475 43956177 ~ 43981885 (+) False LOC110526005
XR_002473856.2 mRNA downstream 53508 44259096 ~ 44260124 (+) True LOC110526008
XM_021606586.2 mRNA downstream 79264 44284852 ~ 44295238 (+) False LOC110526009
XM_036980166.1 mRNA downstream 79264 44284852 ~ 44295238 (+) True LOC110526009
XM_021606590.2 mRNA downstream 90026 44295614 ~ 44309360 (+) True LOC110526012
XR_002473857.2 mRNA downstream 132138 44337726 ~ 44339789 (+) False LOC110526014
TU579244 other upstream 546867 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 1635191 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 1635976 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 2073420 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 2733952 41469551 ~ 41471408 (+) True G507768
TU581131 other downstream 978851 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 1012139 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 1430001 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 1981412 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 2154368 46359956 ~ 46360585 (+) True G513501

Expression Profile