RNA id: TU580307


Basic Information

Item Value
RNA id TU580307
length 1616
lncRNA type antisense_over
GC content 0.39
exon number 3
gene id G511417
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44411832 ~ 44432361 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCATGCACTCTTCAAATAGCCTAAATTCCATGTCAGTGACGGGCTGTTAAGTTAAAACCAGGACTCAAATTGACGGGGTATGAGAGGGTATGCCATAGGCCTACCTTTTATTAAAGAAAATGCAAAAAGCACAGGCACATTGTTAGTTTAAGATTTTGCAAAAATGTTATAAAGTGATCAATAACAGCACTTTGGTCCGCAATGCTTTATGttagaaacaagctgtaaaatacaCTGGAAAGACATGAATGCATATGGGGGATATCATTGTTTAatttctttgacattcagagactgAGCTACAATCTTTTATAGCCGAGGAGACAGAACATGgttgcttgggaagtaatctaattctgtcactatcaattgattaagctattTACATTCTGTACAATAGAAGATGTTTAACCTCAGACAGCTTTTAGAAAACACTTGTTACCTCTGTTGGGTTAAGCCAAggaagaagagtagccagcagttaaaaCTTACATTTGTCTGTGTCGGTCggcctactgtctggggtggaaaggcaggcctactgtctggggtggaaaggtaggcctactgtctggggtggaaaggtagacctaaCTTTTGAAACTACCATGCTCAGATTCCTTACGAcatttctgatttcattatttgCAAACAGGGAGAGTTTCGTTGCAAATaagacacactgatttggcattggaggaatatgataagatgaacacatagataggcctatctctctgtccattcttagcctgtaatttcagtaatttgtgtggtattaaaaaatattttgtaaatacagtatgtaaaatTATGCAGAATTGCATGACATTTTTACAAAAGGCTTTTTTTTCTCTCAGACCTGGAAATACAATGATAGATCAATTCAAAACTTTTCCCACCCCTACTGTGGTCCATAGTGGTCTGTGAACCCACAATCTTCTGGACCCCAAGCCATGTgttgccatgtaatgcttacaggactaagaacagtttctaaaatggcataaggctctggtctgtccaagaagtgaggtAAGGATGTTCTTTGCTATCCACTTTAGGTTTTCATTATTCTTTTGAgtatagggggaggggggggtcacTTGTTATTTTTCAAACGTCTAGGGAGGGTTTAGGTCAAATAAACTTCGCTGAGGGGATGGCCATCCATTTTCATCTCAGAGAGGTCCGATTTTCTCTATCTAATTGCAAATAACATTCACACCCTAATTGGAGTGCCCAGGATTTTGTTTACTATAtaacgtctacccctgagtccaggttgaaaATATGAGTGTGATGGTCTGATGGGTAGGCCCTATTATCTGTACACATTTTCCAACACAGACCATATAGAAATGTACACAGTACAGATAGGATGTGAAAGCAATATATCATTTATACAGATCATGATGTTTCCAAAAATGCAATACCCATTTCCACAAGCTAAGATGTAAAAGTACAAGTACTGTAGTTCTTCAATACAATTGACAAGTTGTCTTGGTGCTGTAGGTGAGAAAGGTTGTCAATGCATTGTGCATTCAATTCACCTAGAATTCATAAACATCTGATATTCCAGATGCTTTGCTGTCTTGAAGAAAgtattcctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580277 lncRNA upstream 44597 44365975 ~ 44367235 (+) True G511389
TU580158 lncRNA upstream 59079 44352550 ~ 44352753 (+) True G511285
TU580155 lncRNA upstream 60748 44350248 ~ 44351084 (+) True G511283
TU580156 lncRNA upstream 61797 44349624 ~ 44350035 (+) True G511284
TU580157 lncRNA upstream 61889 44349125 ~ 44349943 (+) False G511284
TU580321 lncRNA downstream 3977 44436338 ~ 44438861 (+) False G511430
TU580320 lncRNA downstream 4008 44436369 ~ 44439473 (+) True G511430
TU580322 lncRNA downstream 8134 44440495 ~ 44441391 (+) True G511431
TU580326 lncRNA downstream 14706 44447067 ~ 44447423 (+) True G511435
TU580327 lncRNA downstream 15136 44447497 ~ 44447956 (+) True G511436
XM_021606591.2 mRNA upstream 63045 44345482 ~ 44348787 (+) True LOC110526013
XR_002473857.2 mRNA upstream 72043 44337726 ~ 44339789 (+) False LOC110526014
XM_021606590.2 mRNA upstream 102472 44295614 ~ 44309360 (+) True LOC110526012
XM_021606586.2 mRNA upstream 116594 44284852 ~ 44295238 (+) False LOC110526009
XR_005052115.1 mRNA downstream 297706 44730067 ~ 44740572 (+) False LOC110526020
XR_005052117.1 mRNA downstream 441024 44873385 ~ 44891032 (+) False LOC110526024
XR_005052116.1 mRNA downstream 441024 44873385 ~ 44891045 (+) False LOC110526024
XR_002473860.2 mRNA downstream 441024 44873385 ~ 44891056 (+) False LOC110526024
XM_021606601.2 mRNA downstream 441025 44873386 ~ 44891321 (+) False LOC110526024
TU579244 other upstream 753339 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 1841663 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 1842448 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 2279892 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 2940424 41469551 ~ 41471408 (+) True G507768
TU581131 other downstream 752078 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 785366 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 1203228 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 1754639 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 1927595 46359956 ~ 46360585 (+) True G513501

Expression Profile