RNA id: TU580477



Basic Information


Item Value
RNA id TU580477
length 344
lncRNA type intronic
GC content 0.62
exon number 1
gene id G511577
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44655225 ~ 44655568 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgcagtGGACGACTGGTTCGGGCGGGCGGAGGAAACATGGGacacgtccaccttcagcgtgccGTTCTGTGCTGTGCCCCAAAGTGGGCACAGACCATCACCGTAGTGAGGCCCCGGTGCGAACCGGGTCTGGCTcttgacccgaaacctgcccctccgcctgccctgccggaagctgggcccgcggtttgtggggccattcacagtcctgaggagagtgaacgaggtgtgttacaggttacagcttccccccgattactgtattaacccctcgttccatgtgtctctcctcagaccGGTGGTGGTTGgtccgctccaggagtctgaggtgcgggaggttcctc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU580473 lncRNA upstream 9777 44645224 ~ 44645448 (+) True G511573
TU580464 lncRNA upstream 31507 44623249 ~ 44623718 (+) True G511564
TU580435 lncRNA upstream 66704 44588241 ~ 44588521 (+) True G511535
TU580432 lncRNA upstream 71862 44580252 ~ 44583363 (+) True G511532
TU580327 lncRNA upstream 207269 44447497 ~ 44447956 (+) True G511436
TU580519 lncRNA downstream 74611 44730179 ~ 44740687 (+) True LOC110526020
TU580547 lncRNA downstream 94073 44749641 ~ 44750048 (+) True G511647
TU580696 lncRNA downstream 364679 45020247 ~ 45045920 (+) True G511781
TU581127 lncRNA downstream 402143 45057711 ~ 45058035 (+) True G512188
TU581221 lncRNA downstream 551691 45207259 ~ 45207720 (+) True G512277
XM_021606591.2 mRNA upstream 306438 44345482 ~ 44348787 (+) True LOC110526013
XR_002473857.2 mRNA upstream 315436 44337726 ~ 44339789 (+) False LOC110526014
XM_021606590.2 mRNA upstream 345865 44295614 ~ 44309360 (+) True LOC110526012
XM_021606586.2 mRNA upstream 359987 44284852 ~ 44295238 (+) False LOC110526009
XR_005052115.1 mRNA downstream 74499 44730067 ~ 44740572 (+) False LOC110526020
XR_005052117.1 mRNA downstream 217817 44873385 ~ 44891032 (+) False LOC110526024
XR_005052116.1 mRNA downstream 217817 44873385 ~ 44891045 (+) False LOC110526024
XR_002473860.2 mRNA downstream 217817 44873385 ~ 44891056 (+) False LOC110526024
XM_021606601.2 mRNA downstream 217818 44873386 ~ 44891321 (+) False LOC110526024
TU579244 other upstream 996732 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 2085056 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 2085841 42567105 ~ 42569384 (+) False G509160
TU577295 other upstream 2523285 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 3183817 41469551 ~ 41471408 (+) True G507768
TU581131 other downstream 528871 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 562159 45217727 ~ 45220782 (+) False LOC110526028
TU581924 other downstream 980021 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 1531432 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 1704388 46359956 ~ 46360585 (+) True G513501

Expression Profile