RNA id: TU580939


Basic Information

Item Value
RNA id TU580939
length 591
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G512009
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44728893 ~ 44729483 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggccttcctgtgacatcgggtggtgtaggtgtcctggagggcaggtagtttgccccaagtgatgcgttgtgcagacctcactaccctctggagagccttacggttgaggacggagcagttgccgtaccaggcggtgatacagcccgacaggatgctctcgattgtgcatctgtagaagtttgtgagtgcttttggtgacaagccaaatttcttcagcctcctgaggttgaagaggcgctgatgcgcctgtctgtgtgagtggaccaattcagtttgtctgtgatgtgtatgccgaggaacttaaaacttgctaccctctccactactgttccatcgatgtggataggggggtgttccctatgctgtttcctgaagtccacaatcatctccttagttttgttgacgttgagtgtgaggttattttcctgacaccacactccgagggccctcacctcctccctgtaggccgtctcgtcgttgttggtaatcaagcctaccactgttgtgtcgtccgcaaacttgatgattgagttggaggcgtgcgtggccacgcagtcgtgggtgaacagggagtacaggagagggctcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580938 lncRNA downstream 68 44727822 ~ 44728825 (-) True G512008
TU580896 lncRNA downstream 69406 44658893 ~ 44659487 (-) True G511967
TU580887 lncRNA downstream 85359 44643285 ~ 44643534 (-) True G511958
TU580886 lncRNA downstream 86294 44642399 ~ 44642599 (-) True G511957
TU580806 lncRNA downstream 178616 44523903 ~ 44550277 (-) True G511885
TU581020 lncRNA upstream 147142 44876625 ~ 44878344 (-) True G512084
TU581570 lncRNA upstream 421801 45151284 ~ 45152892 (-) True G512599
TU581621 lncRNA upstream 487757 45217240 ~ 45217441 (-) True G512650
TU581626 lncRNA upstream 493394 45222877 ~ 45223103 (-) True G512655
TU581628 lncRNA upstream 496071 45225554 ~ 45226243 (-) True G512657
XM_021606597.2 mRNA downstream 10464 44717516 ~ 44718429 (-) True LOC110526019
XM_036981751.1 mRNA downstream 11804 44643847 ~ 44717089 (-) True LOC118965027
XM_036981750.1 mRNA downstream 136275 44536009 ~ 44592618 (-) True LOC110526017
XM_036980173.1 mRNA downstream 227714 44436292 ~ 44501179 (-) False nos1
XM_021606595.2 mRNA upstream 11456 44740939 ~ 44748610 (-) True wsb2
XM_021606599.2 mRNA upstream 20118 44749601 ~ 44756143 (-) True LOC110526021
XM_036980178.1 mRNA upstream 33408 44762891 ~ 44855138 (-) False taok3a
XM_036980177.1 mRNA upstream 33408 44762891 ~ 44855426 (-) False taok3a
XM_036980176.1 mRNA upstream 33408 44762891 ~ 44855594 (-) False taok3a
TU580171 other downstream 517070 44209465 ~ 44211823 (-) False nf2a
TU580173 other downstream 518228 44209338 ~ 44210665 (-) False nf2a
TU580172 other downstream 518228 44209465 ~ 44210665 (-) True nf2a
TU579749 other downstream 780504 43946338 ~ 43948389 (-) True prodhb
TU579133 other downstream 1204785 43523714 ~ 43524108 (-) True G510310
TU581656 other upstream 545155 45274638 ~ 45276387 (-) True znrf3
TU583050 other upstream 1630405 46359888 ~ 46360886 (-) True apba1a
TU583053 other upstream 1641207 46370690 ~ 46430360 (-) True LOC110526044
TU583552 other upstream 2181175 46910658 ~ 46910950 (-) True G514434
TU583955 other upstream 2286679 47016162 ~ 47016496 (-) True G514777

Expression Profile