RNA id: TU581241



Basic Information


Item Value
RNA id TU581241
length 230
lncRNA type intronic
GC content 0.34
exon number 1
gene id G512297
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45233054 ~ 45233283 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtattatatacacTCTCTTTATTTTTTCGAGTCAATACTGTGCACTCATACATTTGTAAACTTTACTGTGCACTCATACAtgggtaaatgtgtgtgtgtgtacacgttttTGTATGTTGGTGTACAATTTGAATGTTTGCACAACAGTTTGTAAATTTGTGTGAAATCAATTGAACTCCTCTACAAGGTGCCCTACGTCCTATCCAGGTTTATTTCTAGATgatttatac

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU581239 lncRNA upstream 2734 45229910 ~ 45230320 (+) True G512295
TU581211 lncRNA upstream 4720 45223826 ~ 45228334 (+) False LOC110526028
TU581228 lncRNA upstream 19979 45212782 ~ 45213075 (+) True G512284
TU581221 lncRNA upstream 25334 45207259 ~ 45207720 (+) True G512277
TU581127 lncRNA upstream 175019 45057711 ~ 45058035 (+) True G512188
TU581210 lncRNA downstream 69 45233352 ~ 45233929 (+) True LOC110526028
TU581243 lncRNA downstream 2316 45235599 ~ 45235951 (+) True G512299
TU581207 lncRNA downstream 3920 45237203 ~ 45237802 (+) True G512263
TU581250 lncRNA downstream 10147 45243430 ~ 45243648 (+) True G512306
TU581252 lncRNA downstream 14082 45247365 ~ 45248229 (+) True G512308
XM_036980186.1 mRNA upstream 54229 45155981 ~ 45178825 (+) False LOC110526027
XM_021606608.2 mRNA upstream 54229 45155982 ~ 45178825 (+) True LOC110526027
XM_021606606.2 mRNA upstream 80069 45061658 ~ 45152985 (+) True LOC110526025
XM_021606602.2 mRNA upstream 341733 44879802 ~ 44891321 (+) False LOC110526024
XM_021606623.2 mRNA downstream 414451 45647734 ~ 45654067 (+) False si:dkey-174n20.1
XM_036980192.1 mRNA downstream 415158 45648441 ~ 45654067 (+) False si:dkey-174n20.1
XM_021606621.2 mRNA downstream 415356 45648639 ~ 45654067 (+) False si:dkey-174n20.1
XM_021606622.2 mRNA downstream 415865 45649148 ~ 45654067 (+) True si:dkey-174n20.1
XM_021606627.2 mRNA downstream 580115 45813398 ~ 45837739 (+) True LOC110526036
TU581209 other upstream 12272 45217727 ~ 45220782 (+) False LOC110526028
TU581131 other upstream 47185 45184439 ~ 45185869 (+) True G512192
TU579244 other upstream 1574561 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 2662885 42567248 ~ 42570169 (+) True G509160
TU577938 other upstream 2663670 42567105 ~ 42569384 (+) False G509160
TU581924 other downstream 402306 45635589 ~ 45636250 (+) True G512912
TU582342 other downstream 953717 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 1126673 46359956 ~ 46360585 (+) True G513501
TU582823 other downstream 1667278 46900561 ~ 46901123 (+) True G513745
TU583592 other downstream 1693559 46926842 ~ 46927714 (+) True G514464

Expression Profile


TU581241 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
End of interactive chart.

TU581241 Expression in each Bioproject

Bar chart with 9 bars.
TU581241 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.