RNA id: TU581926


Basic Information

Item Value
RNA id TU581926
length 2082
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G512914
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45637367 ~ 45639448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTCatcactgttctgtgaaggaggGGATTTGCTGGTTCCTAAACACCTCCAGATGATCCTGCTGCTCTGCCTGGTGCATCTCTTTGACAGAGGTATTCTCTCTTATAGTCACAGCCGATGGACTATTAGCCTTGGCTAAGGTACCTTGAGGGATTCATAAatagcataacataacataatttGCATGGGGGAAACAatgtttgggaaaccctgagcTAAGAGACCAAGAGATTCATATGAATAGCATATTTGCAGAAAAATATTGGCTAAGATACCATAGATGACACTTGTTTGAACGCTAAATTGCCTTTACTGTAGGCCTAAGTGCAGACACACTTTAACATAACCTACTGTAAGGGATTACATTTCATACGCATAGCATAACctcaaatatactgtacataagaTATAATGTAATATTAACTTGACAGCTCTCCGCAACATCAGCCCCAATCCAGATGTTCTACTGATCTGTCAAAAATAATGAGCTGAACATCACTGGCATCTGGCCATCTTCAATGATTTGGCTTTGGATTGGCtttaaaaaagtatttgatttgtaGGTTCTCCTAACCAACGTAGCTTCATAGCAGCTGTGCCAGACTCAGATTGACCCCCAGAGAGATTAGCTGAGAgcaatgggtcctcagatcccaAGCAAGAGGAAATaagatgtttttgttttttacgtCGCCAAAATGTTTTCACTCCCAGAAGTATCTCAAGACCCAGACTGCTTCACTCTGTTGTTGTGTAAAAGAGAATACatggagtgtgtgcgtgtgtgtctgtgtgagaaacTGAAGTGGGAtgacacctctctgggaagaagagCTAGCTAGCGCTctgttaaataaaatgtattaaaacttgTTTAGAAGTAAAAAGGTGTAATTACCATTAAAGCAGGTCTGAATGCATTCATTATCTTTACAACACAATCAAACCACCAaacaattaaatcaaatcaaagtttatttgtcacgtgcaccgattacaactggtgtagacattacagtgaaatacttacttacaggctctaaccaatagtgcggagaaaaaaaagtatgtgtgtgtgtgtgtagcaaggctatatacagacaccggttagtcaggcttattgaggtagtatgtacatgtgggtatggttaaagtgacaatgcatatatgatgaacagagagtagcagtagcgaaaaagaggggttggcgggtggtgggacacaatttggttacctgttcaggagtcttatggcttgggggtaaaaactgttgagaagccttttttttgtcctagacttggcactccggtaccccttgccggtagtagagagaacagtcagtctatgactagggtggctggggtctttgacaattttcagggccttcctctgacgccgcctggtgtagaggtcctggatggcaggcagcttttccACAGTGATTTACTgagccgtacgcattaccctacTGAAGTGCCTTGCGGCCGGAGGCCGAGCATTTgacgtaccaggcagtgattaaTTACAGAATTATTTATCTTTCAAGATGAGCCTGAATCCCTGAGCACCTTAAACAAAGACTGCGATAAATATAGAAAGGCtgaaacagagacaaagagaaacagaggcagagaggctgagacagagaggtagcCAGTCTAGCCACCCTAGGGATGAGAGGGTGCATAGACACTACCAGCCCTCTCACAGCAGAGGGAAAACTCACCGTTCTCTAGTTTCACCTGCTCTGTCCGGCCCTGAATTCTCTGCCCTCTGCCTGGGGAGTCAACCCGGCAGTATTCTCCTTTCCCATTGAAAGTGTACTTCACGCCGTCAAACGTTATAAAATGGGGGTCCCCCAGGACTGCACCTAGGAGGGTGTTACAGGGAGAAATAGCAGTTTGGCACTGGCACTTGTTTTGTATTGAAGAGATAAAGCAGCACATTATTCAATATGACACCTGTGGCACATAAAAACTGAGAAGAGATGCACAGAGAGACCTGACTAAAAACGGCTTCCCTTATTAACACAACTAAATTATATATGCATGGCCCTGTAACAACCTATACAGTATTCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU581925 lncRNA upstream 283 45636848 ~ 45637084 (+) True G512913
TU581923 lncRNA upstream 3028 45634086 ~ 45634339 (+) True G512911
TU581922 lncRNA upstream 3633 45633260 ~ 45633734 (+) True G512910
TU581901 lncRNA upstream 20309 45616851 ~ 45617058 (+) True G512889
TU581898 lncRNA upstream 22156 45614944 ~ 45615211 (+) True G512886
TU581928 lncRNA downstream 3356 45642804 ~ 45643357 (+) True G512916
TU582002 lncRNA downstream 105501 45744949 ~ 45745157 (+) True G512988
TU582041 lncRNA downstream 151218 45790666 ~ 45793785 (+) True G513021
TU582044 lncRNA downstream 158053 45797501 ~ 45797808 (+) True G513024
TU582050 lncRNA downstream 168567 45808015 ~ 45808239 (+) True G513030
XM_021606612.2 mRNA upstream 400423 45187119 ~ 45236944 (+) False LOC110526028
XM_021606609.2 mRNA upstream 400423 45187253 ~ 45236944 (+) False LOC110526028
XM_021606610.2 mRNA upstream 400423 45187257 ~ 45236944 (+) False LOC110526028
XM_036980186.1 mRNA upstream 458542 45155981 ~ 45178825 (+) False LOC110526027
XM_021606623.2 mRNA downstream 8286 45647734 ~ 45654067 (+) False si:dkey-174n20.1
XM_036980192.1 mRNA downstream 8993 45648441 ~ 45654067 (+) False si:dkey-174n20.1
XM_021606621.2 mRNA downstream 9191 45648639 ~ 45654067 (+) False si:dkey-174n20.1
XM_021606622.2 mRNA downstream 9700 45649148 ~ 45654067 (+) True si:dkey-174n20.1
XM_021606627.2 mRNA downstream 173950 45813398 ~ 45837739 (+) True LOC110526036
TU581924 other upstream 1117 45635589 ~ 45636250 (+) True G512912
TU581209 other upstream 416585 45217727 ~ 45220782 (+) False LOC110526028
TU581131 other upstream 451498 45184439 ~ 45185869 (+) True G512192
TU579244 other upstream 1978874 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 3067198 42567248 ~ 42570169 (+) True G509160
TU582342 other downstream 547552 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 720508 46359956 ~ 46360585 (+) True G513501
TU582823 other downstream 1261113 46900561 ~ 46901123 (+) True G513745
TU583592 other downstream 1287394 46926842 ~ 46927714 (+) True G514464
TU583628 other downstream 1382846 47022294 ~ 47023092 (+) True G514499

Expression Profile