RNA id: TU582044


Basic Information

Item Value
RNA id TU582044
length 308
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G513024
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45797501 ~ 45797808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggttgtatcaccgcctggtacggcaactgctccgcccacaaccgtaaggctctacagagggtagtgaggtctgcacaatgcatcaccgggggcaaactacctgccctccaggacacctacagcacctgatgtcacaggaaggccaaaaagatcatcaagaacagctgcctgttcaccccgctatcatccagaaggcgaggtcagtacaggtacatcaaagctggggccgagagactgaaaaacagcttctatctcatggccatcagactgttaaatagccaccattgttagatgttacttgttagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582041 lncRNA upstream 3716 45790666 ~ 45793785 (+) True G513021
TU582002 lncRNA upstream 52344 45744949 ~ 45745157 (+) True G512988
TU581928 lncRNA upstream 154144 45642804 ~ 45643357 (+) True G512916
TU581926 lncRNA upstream 158053 45637367 ~ 45639448 (+) True G512914
TU581925 lncRNA upstream 160417 45636848 ~ 45637084 (+) True G512913
TU582050 lncRNA downstream 10207 45808015 ~ 45808239 (+) True G513030
TU582053 lncRNA downstream 53425 45851233 ~ 45863183 (+) True G513033
TU582064 lncRNA downstream 106285 45904093 ~ 45906563 (+) True G513043
TU582416 lncRNA downstream 335390 46133198 ~ 46141623 (+) True G513363
TU582349 lncRNA downstream 378017 46175825 ~ 46176150 (+) False LOC110526042
XM_021606623.2 mRNA upstream 143434 45647734 ~ 45654067 (+) False si:dkey-174n20.1
XM_036980192.1 mRNA upstream 143434 45648441 ~ 45654067 (+) False si:dkey-174n20.1
XM_021606621.2 mRNA upstream 143434 45648639 ~ 45654067 (+) False si:dkey-174n20.1
XM_021606622.2 mRNA upstream 143434 45649148 ~ 45654067 (+) True si:dkey-174n20.1
XM_021606610.2 mRNA upstream 560557 45187257 ~ 45236944 (+) False LOC110526028
XM_021606627.2 mRNA downstream 15590 45813398 ~ 45837739 (+) True LOC110526036
LOC110526902 mRNA downstream 75011 45872819 ~ 45873709 (+) True LOC110526902
XR_005052121.1 mRNA downstream 102111 45899919 ~ 45901120 (+) True LOC118964875
XR_002473699.2 mRNA downstream 160622 45958430 ~ 45959299 (+) True LOC110525032
XR_005052124.1 mRNA downstream 170656 45968464 ~ 45972013 (+) True LOC110526904
TU581924 other upstream 161251 45635589 ~ 45636250 (+) True G512912
TU581209 other upstream 576719 45217727 ~ 45220782 (+) False LOC110526028
TU581131 other upstream 611632 45184439 ~ 45185869 (+) True G512192
TU579244 other upstream 2139008 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 3227332 42567248 ~ 42570169 (+) True G509160
TU582342 other downstream 389192 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 562148 46359956 ~ 46360585 (+) True G513501
TU582823 other downstream 1102753 46900561 ~ 46901123 (+) True G513745
TU583592 other downstream 1129034 46926842 ~ 46927714 (+) True G514464
TU583628 other downstream 1224486 47022294 ~ 47023092 (+) True G514499

Expression Profile