RNA id: TU582416


Basic Information

Item Value
RNA id TU582416
length 1758
lncRNA type intronic
GC content 0.38
exon number 2
gene id G513363
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46133198 ~ 46141623 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaataaagaaaataccctggaataagtaggtgtgtccaaacttttgactggtactatatattcagaaaacaaaagtgccatttaagatgaatTTATTGAAACtataatatcaactggttattattatattgtggAAAACAATCTTCAAAAAGGTAGTAACCTCAGCAGTGGTGTTCTCTTGTAGAAGCCTATGGCTGTGCAATGCCATAGCCTTGttttgttaatttagcagacaagacgCTCTTATTTTCCAAGCCCTTATCACAGTCAAGACACACCTATTTTCTAGTAAAAAACATGATCTAATATAACAGACTATGTAATACGCATCTCGCATCTGGAACAGTTattctgtaaatgagaacgttTTCTCAGTCAACTTGGTAGtcaacctggtaaaataaatgataaattagaaaaataaaaacattctcaaagagtgatcatttgaaacagggcTCAAGTTGAAAGACAATTTGTTCAGGGTTACAAACCAAATCTCCCTTCTGTTCGATATACAGACATTGCTTATTCTGCCTGCTGTTTGGAATTTTCTAAATGGATGAACAATTCCACATTTGAACACTTCATGGGGATGAATTATGGCCAAAACATATATTTGGTGAGTAGGCCGAGGCTTAATGATTCTGATAAATACACTTTCTTTATCAAACTAATGTTTTTGCATATTTTCAGTGTGGACCCGTGCGATGTTCAGGGGGATTATAGCCTAGGCCAGGGCTGTTCTTGAagaccctgttcctgtagagctacagtcctgtaTTTTTTTTTGACTCGCACCCTAATCTAGCAGACCGTATTTGAATAATTAGCTGGTTTATAAGCTGAACCAGGTTAGGTACACCTGgcgttggagcgaaaacctacaggagggtatctctccaggaacagggttggaggccCCTGGCCTAGGTTAACCAATTATAAGTGGCACTAGCAGTTTGGCAACGTATGtgcgtcactagttaccacagccacaaagtcataaacctcTCCAATTTCTAAAGTGTATCTTCttcaaatctgattttaaacctttaaccacactgctaacattatgcataaccctaaacttaaatTAAGACTTTTTTTTCTAAATAATGCCAAATCTGACTTTGTAAATGCGATTACTAGTGACAACTGCAATGTAGCAGTAGCCTAAATGGAAATTAGACTGGATGCAATTATTCCAAAACTGCAGCTCATTGTTGGAACACATATTTCCCTACTTCAGTCAACCAGCCATTTTGAATTTGTGATAAAACTGTCGTCATTTTGCAAGGAATGTAGCTTGTGTTTAAAGGAAGTGGTCGGGATGCGATTTGAATGAGTGAGACAGAGGGGAAAGGGAATTTAGGGAGAAGAACTGTTTGATACTAGGCTTGGTTTAATTTTTGGACCAATACAATGTGAattgatttatttttttgttgtgccCTGCAACTGCACATGCaattgtaggaaattagcttgaaaactgcaacattttcatCCAGCCATGCCCTGCTGAAGTTATAGTAAAACTCCTATGCTATGTTTGTCTCACTCGAGTTGTgttctgattattattattttacctttatttaactgggcaagtcagttatgagAGGGTCCCTGATTTAATTTGCTATTACAAAAGGGCTCCCTGTTCCCAaaaagtttgagaacccctgctCTTTGTTGTGAGCTGAGGGACACTGGGGAGAAGCAGAGGTGTAACTGACTGACTCACTTCA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582064 lncRNA upstream 226635 45904093 ~ 45906563 (+) True G513043
TU582053 lncRNA upstream 270015 45851233 ~ 45863183 (+) True G513033
TU582050 lncRNA upstream 324959 45808015 ~ 45808239 (+) True G513030
TU582044 lncRNA upstream 335390 45797501 ~ 45797808 (+) True G513024
TU582041 lncRNA upstream 339413 45790666 ~ 45793785 (+) True G513021
TU582349 lncRNA downstream 34202 46175825 ~ 46176150 (+) False LOC110526042
TU582433 lncRNA downstream 51805 46193428 ~ 46193656 (+) True G513377
TU582435 lncRNA downstream 53615 46195238 ~ 46195439 (+) True G513379
TU582436 lncRNA downstream 54153 46195776 ~ 46196008 (+) True G513380
TU582485 lncRNA downstream 121499 46263122 ~ 46267533 (+) True G513427
XR_005052124.1 mRNA upstream 161185 45968464 ~ 45972013 (+) True LOC110526904
XR_002473699.2 mRNA upstream 173899 45958430 ~ 45959299 (+) True LOC110525032
XR_005052121.1 mRNA upstream 232078 45899919 ~ 45901120 (+) True LOC118964875
LOC110526902 mRNA upstream 259489 45872819 ~ 45873709 (+) True LOC110526902
XM_021606627.2 mRNA upstream 295459 45813398 ~ 45837739 (+) True LOC110526036
XM_036980249.1 mRNA downstream 57896 46199519 ~ 46263098 (+) True LOC110526905
XM_036980252.1 mRNA downstream 304333 46445956 ~ 46461957 (+) True ascc2
XM_021606645.2 mRNA downstream 329861 46471484 ~ 46514756 (+) False LOC110526048
XM_021606646.2 mRNA downstream 329861 46471484 ~ 46514756 (+) False LOC110526048
XM_021606647.2 mRNA downstream 329861 46471484 ~ 46514756 (+) False LOC110526048
TU581924 other upstream 496948 45635589 ~ 45636250 (+) True G512912
TU581209 other upstream 912416 45217727 ~ 45220782 (+) False LOC110526028
TU581131 other upstream 947329 45184439 ~ 45185869 (+) True G512192
TU579244 other upstream 2474705 43657468 ~ 43658493 (+) True G510416
TU577937 other upstream 3563029 42567248 ~ 42570169 (+) True G509160
TU582342 other downstream 45377 46187000 ~ 46190292 (+) True LOC110526042
TU582564 other downstream 218333 46359956 ~ 46360585 (+) True G513501
TU582823 other downstream 758938 46900561 ~ 46901123 (+) True G513745
TU583592 other downstream 785219 46926842 ~ 46927714 (+) True G514464
TU583628 other downstream 880671 47022294 ~ 47023092 (+) True G514499

Expression Profile