RNA id: TU582436


Basic Information

Item Value
RNA id TU582436
length 233
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G513380
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46195776 ~ 46196008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAAACGCAAGCTTGCCGACAAATGGGAACCAGACGTTTACACTGTTGTGGCTTCAAAGCCTGGACTCCACATCTACAAGATCTGGGGTCATAGTGGAAATGAGAAGGTGGTGCAGAGAAACTTTCTGCTCCAAGTAAACTTCTTCCCCTTGGATGAGACACAGGATATGTCAGACCACAGCTTCAAGAGCGACAACAGTATGGGAAGTGACACCCATGTGACTGATGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582435 lncRNA upstream 337 46195238 ~ 46195439 (+) True G513379
TU582433 lncRNA upstream 2120 46193428 ~ 46193656 (+) True G513377
TU582349 lncRNA upstream 19626 46175825 ~ 46176150 (+) False LOC110526042
TU582416 lncRNA upstream 54153 46133198 ~ 46141623 (+) True G513363
TU582064 lncRNA upstream 289213 45904093 ~ 45906563 (+) True G513043
TU582485 lncRNA downstream 67114 46263122 ~ 46267533 (+) True G513427
TU582565 lncRNA downstream 171644 46367652 ~ 46367855 (+) True G513502
TU582587 lncRNA downstream 295396 46491404 ~ 46507535 (+) False G513523
TU582588 lncRNA downstream 307280 46503288 ~ 46516159 (+) True G513523
TU582694 lncRNA downstream 450960 46646968 ~ 46697374 (+) True G513619
XM_036980247.1 mRNA upstream 5484 46076084 ~ 46190292 (+) False LOC110526042
XM_036980248.1 mRNA upstream 5484 46100977 ~ 46190292 (+) False LOC110526042
XR_005052124.1 mRNA upstream 223763 45968464 ~ 45972013 (+) True LOC110526904
XR_002473699.2 mRNA upstream 236477 45958430 ~ 45959299 (+) True LOC110525032
XR_005052121.1 mRNA upstream 294656 45899919 ~ 45901120 (+) True LOC118964875
XM_036980249.1 mRNA downstream 3511 46199519 ~ 46263098 (+) True LOC110526905
XM_036980252.1 mRNA downstream 249948 46445956 ~ 46461957 (+) True ascc2
XM_021606645.2 mRNA downstream 275476 46471484 ~ 46514756 (+) False LOC110526048
XM_021606646.2 mRNA downstream 275476 46471484 ~ 46514756 (+) False LOC110526048
XM_021606647.2 mRNA downstream 275476 46471484 ~ 46514756 (+) False LOC110526048
TU582342 other upstream 5484 46187000 ~ 46190292 (+) True LOC110526042
TU581924 other upstream 559526 45635589 ~ 45636250 (+) True G512912
TU581209 other upstream 974994 45217727 ~ 45220782 (+) False LOC110526028
TU581131 other upstream 1009907 45184439 ~ 45185869 (+) True G512192
TU579244 other upstream 2537283 43657468 ~ 43658493 (+) True G510416
TU582564 other downstream 163948 46359956 ~ 46360585 (+) True G513501
TU582823 other downstream 704553 46900561 ~ 46901123 (+) True G513745
TU583592 other downstream 730834 46926842 ~ 46927714 (+) True G514464
TU583628 other downstream 826286 47022294 ~ 47023092 (+) True G514499
TU583803 other downstream 1107175 47303183 ~ 47329244 (+) True G514662

Expression Profile