RNA id: TU582588


Basic Information

Item Value
RNA id TU582588
length 2615
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G513523
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46491404 ~ 46516159 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtagatagttTATTTCTATATGTTGGGCTTTAGCTTAGGTTATTATTTACAGATTCAAGTATATTTGTCCAGGCCTCAATTGTTCCCTGACTAGCACCATTCATTCTCCCTGTTGATATTTCTAATGTTACAACTTCTAATAGTAACTGTATCCACTGGTGAactgggagagagtgaggtgattGCCATCTATGAGCCAACAACTTTTTTTGTGGCAGTGTCACCTGCCAACGGTAATCATCTCTGATTGATTAAGAGATTCAAGGAGCTATCATCGTTAAGTAACATAGTAGATGGAAAGCATTGAATATTTACATTCATGCACTTCAAAATCAATTGTGTAACTTTTTTGCCAGAAGCATTTAACTGCAGCAGGGCACTCCCACATCATATGAAAGAATGTGACTACCTGATTTAGGGTACACGGTGAACAGTTGGGAGTTGGGACCAATTTCATTGTAAAAAAAATCCTTGGTGTTAAATACAGTCTGTGACAAAACTttgaatatacactgagtgcacaaaacattaggaacacctgctctttctgtgacatagactgaccaggtgaattcaggtgaaggTTAtgctcccttattgatgtcacatgttaaatccacttcaatcagtgtagatgaaagggaggagatgggttaaagaaggattttcaagccttgagacaattgagctATGAATTGTGtactattcagagggtgaatgggcaagacaaaagatgtaggtgcctttgaatggggtatggtagtaggtgccagtgtcgatttgtcaagaactgcaatgctgctgggtttttcactctcaacagtttcctgtgtgtgtggtccaccacccaaaggacacccagccaacttgacacaactgtgggaagcattggagtcaacattggccagcattcctgtgaaatgcttttgacaccttgtagagtccatgccctgatgaattgaggctgttctgcggGCAAAACTCCTGTGTTccttatgttttgtacactcattgtatacagttgaagtcggaagtttacacacacttaggtttgagtcattaaaactcatttttcaaccactccacaaatgtattgttaacaaactcggttaggatatctactttgtgcatgacacaagtaatttttccaacaattgtttacagacaggttattgtatttcaaggcctaccttcaaacccagtgcctctttgcttgacatcatggaaaaaacaaaagagatgagccaagacctcaggaaaaaaattgtagacctccacaagtcttgttcatcattgggagcaattttcaaacagtagtacgcaagtataaacaccatgggaccacgcagccgtcataccgttcaggaaggagacacgttctgtcttctagagatgaatgtactttggtgcaaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtcaagatgctggaggaaacaggcacaaaagtatctatatccacagtaaaacgagtcctatatcgacataacctgaaaggtgctcagcaaggaagaagccactgctccaaaacgccattaaaaaaaagactacagtttgcaactgcacataaggacaaagattgtactttttggagaaatgtcctctggtctgatgaaactgtttggccataatgaccatcattatgtttggcagaaaaagggggaggcttgcaagccgaagaacaccatcccaactgtgaagcacgggggtggcagcatcgttgtgggggtgctttgttgcaggagggactggtgcacttcacaaaatagatggcatcaggagGAATGATAATTATATGGAtagattgaagcaacatctcaagacatcagtagaagttaaagcttggtcgcaaatgagtctccaaatggacaatgaccacaagcatacttcctaagttgtggcaaaatagcttaaggacaacaaagtcaaggcattggaatagccatcacaaagccctgacctcaatcctatatataatgtgtgggcagagctgaaaaaagtgtgtgcgagcaaggaggcctacacacctggcTCCATTACACCAgctgtgtcaggaggaatgggccaaaattcacccaacttattgtgggaagcttgtgaaaggctacgtttgacccaagttaaacaatttaaaagcaacgctaccaaatactaattgagtgtatgtaaagttctgacccactgggaatgtgatgaaagaaataaaagctgaaagaaatcattatctctactattattctgacatgtcacattcttaaaatatagtggtgatcctaactgacaggaCATTTTACTAgtatttaatgtcaggaattgtggaaaatctgagtttaaatgtatttggctaaggtgtatgtaaacttcaactgtaggtgttccttttgtccaggtgggaaagggaagtgttgagtgcaatagagattgcattatctgtggatctgttggggcagtatgcaaattggattgggtctagggtttc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582565 lncRNA upstream 135433 46367652 ~ 46367855 (+) True G513502
TU582485 lncRNA upstream 235755 46263122 ~ 46267533 (+) True G513427
TU582436 lncRNA upstream 307280 46195776 ~ 46196008 (+) True G513380
TU582435 lncRNA upstream 307849 46195238 ~ 46195439 (+) True G513379
TU582433 lncRNA upstream 309632 46193428 ~ 46193656 (+) True G513377
TU582694 lncRNA downstream 130809 46646968 ~ 46697374 (+) True G513619
TU582824 lncRNA downstream 385391 46901550 ~ 46903598 (+) True G513746
TU582826 lncRNA downstream 389530 46905689 ~ 46905904 (+) True G513748
TU582827 lncRNA downstream 390362 46906521 ~ 46906796 (+) True G513749
TU583544 lncRNA downstream 390955 46907114 ~ 46907423 (+) True G514426
XM_036980252.1 mRNA upstream 41331 46445956 ~ 46461957 (+) True ascc2
XM_036980249.1 mRNA upstream 240190 46199519 ~ 46263098 (+) True LOC110526905
XM_036980247.1 mRNA upstream 312996 46076084 ~ 46190292 (+) False LOC110526042
XM_036980248.1 mRNA upstream 312996 46100977 ~ 46190292 (+) False LOC110526042
XR_005052124.1 mRNA upstream 531275 45968464 ~ 45972013 (+) True LOC110526904
XM_021606649.2 mRNA downstream 26445 46542604 ~ 46567635 (+) True LOC110526049
XM_036980257.1 mRNA downstream 58776 46574935 ~ 46708962 (+) False msh3
XM_021606652.2 mRNA downstream 60065 46576224 ~ 46707761 (+) False msh3
XM_021606650.2 mRNA downstream 60065 46576224 ~ 46708962 (+) False msh3
XM_021606651.2 mRNA downstream 60065 46576224 ~ 46708962 (+) False msh3
TU582564 other upstream 142703 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 312996 46187000 ~ 46190292 (+) True LOC110526042
TU581924 other upstream 867038 45635589 ~ 45636250 (+) True G512912
TU581209 other upstream 1282506 45217727 ~ 45220782 (+) False LOC110526028
TU581131 other upstream 1317419 45184439 ~ 45185869 (+) True G512192
TU582823 other downstream 384402 46900561 ~ 46901123 (+) True G513745
TU583592 other downstream 410683 46926842 ~ 46927714 (+) True G514464
TU583628 other downstream 506135 47022294 ~ 47023092 (+) True G514499
TU583803 other downstream 787024 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 790279 47306438 ~ 47320050 (+) True G514665

Expression Profile