RNA id: TU582826


Basic Information

Item Value
RNA id TU582826
length 216
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G513748
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46905689 ~ 46905904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gataattgtacgtgtggggtacagagatgaggtagtcaatccaaaaatcatgttaaacactattattgcacacagagtgagtccatgtgacttacagtgaggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtacacttcaactatgacagacaaaatgagggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582824 lncRNA upstream 2091 46901550 ~ 46903598 (+) True G513746
TU582694 lncRNA upstream 208315 46646968 ~ 46697374 (+) True G513619
TU582588 lncRNA upstream 389530 46503288 ~ 46516159 (+) True G513523
TU582587 lncRNA upstream 398154 46491404 ~ 46507535 (+) False G513523
TU582565 lncRNA upstream 537834 46367652 ~ 46367855 (+) True G513502
TU582827 lncRNA downstream 617 46906521 ~ 46906796 (+) True G513749
TU583544 lncRNA downstream 1210 46907114 ~ 46907423 (+) True G514426
TU583545 lncRNA downstream 1973 46907877 ~ 46908171 (+) True G514427
TU583551 lncRNA downstream 4629 46910533 ~ 46910911 (+) True G514433
TU583554 lncRNA downstream 6698 46912602 ~ 46912854 (+) True G514436
XM_036980258.1 mRNA upstream 5685 46722960 ~ 46900004 (+) False rasgrf2b
XM_036980260.1 mRNA upstream 5685 46722960 ~ 46900004 (+) True rasgrf2b
XM_021606650.2 mRNA upstream 196727 46576224 ~ 46708962 (+) False msh3
XR_005052125.1 mRNA downstream 25180 46931084 ~ 46935277 (+) True LOC118964876
XM_036980261.1 mRNA downstream 51598 46957502 ~ 46978128 (+) False LOC110526054
XM_021606657.2 mRNA downstream 51603 46957507 ~ 46978128 (+) False LOC110526054
XM_036980263.1 mRNA downstream 87692 46993596 ~ 46998667 (+) False LOC110526907
XM_036980264.1 mRNA downstream 87692 46993596 ~ 47004352 (+) False LOC110526907
TU582823 other upstream 4566 46900561 ~ 46901123 (+) True G513745
TU582564 other upstream 545104 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 715397 46187000 ~ 46190292 (+) True LOC110526042
TU581924 other upstream 1269439 45635589 ~ 45636250 (+) True G512912
TU581209 other upstream 1684907 45217727 ~ 45220782 (+) False LOC110526028
TU583592 other downstream 20938 46926842 ~ 46927714 (+) True G514464
TU583628 other downstream 116390 47022294 ~ 47023092 (+) True G514499
TU583803 other downstream 397279 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 400534 47306438 ~ 47320050 (+) True G514665
TU583904 other downstream 607882 47513786 ~ 47516710 (+) True LOC118964881

Expression Profile