RNA id: TU583544


Basic Information

Item Value
RNA id TU583544
length 310
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G514426
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46907114 ~ 46907423 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttacagaaaacatttgatctctgtcattgccaacaaaggtgtCATTGCCAACAATAACAAAGTATTTTGATAAactcttgttattgttattgtacctccggtacctcaccttcttgtaggggaccagctaccaccggcctgaggagagacaattgaaacgaggggttaatgcgatagtaagagggaagttgcaatctataacacacctcgtttatcctcctcaggactttgaatggccccccacactgcggccccagcttccgtcAGGGCatgcggaggggcaggtttcgtgTCGAGAGCCAGatcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582827 lncRNA upstream 318 46906521 ~ 46906796 (+) True G513749
TU582826 lncRNA upstream 1210 46905689 ~ 46905904 (+) True G513748
TU582824 lncRNA upstream 3516 46901550 ~ 46903598 (+) True G513746
TU582694 lncRNA upstream 209740 46646968 ~ 46697374 (+) True G513619
TU582588 lncRNA upstream 390955 46503288 ~ 46516159 (+) True G513523
TU583545 lncRNA downstream 454 46907877 ~ 46908171 (+) True G514427
TU583551 lncRNA downstream 3110 46910533 ~ 46910911 (+) True G514433
TU583554 lncRNA downstream 5179 46912602 ~ 46912854 (+) True G514436
TU583563 lncRNA downstream 7546 46914969 ~ 46915260 (+) True G514440
TU583572 lncRNA downstream 12201 46919624 ~ 46920554 (+) True G514449
XM_036980258.1 mRNA upstream 7110 46722960 ~ 46900004 (+) False rasgrf2b
XM_036980260.1 mRNA upstream 7110 46722960 ~ 46900004 (+) True rasgrf2b
XM_021606650.2 mRNA upstream 198152 46576224 ~ 46708962 (+) False msh3
XR_005052125.1 mRNA downstream 23661 46931084 ~ 46935277 (+) True LOC118964876
XM_036980261.1 mRNA downstream 50079 46957502 ~ 46978128 (+) False LOC110526054
XM_021606657.2 mRNA downstream 50084 46957507 ~ 46978128 (+) False LOC110526054
XM_036980263.1 mRNA downstream 86173 46993596 ~ 46998667 (+) False LOC110526907
XM_036980264.1 mRNA downstream 86173 46993596 ~ 47004352 (+) False LOC110526907
TU582823 other upstream 5991 46900561 ~ 46901123 (+) True G513745
TU582564 other upstream 546529 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 716822 46187000 ~ 46190292 (+) True LOC110526042
TU581924 other upstream 1270864 45635589 ~ 45636250 (+) True G512912
TU581209 other upstream 1686332 45217727 ~ 45220782 (+) False LOC110526028
TU583592 other downstream 19419 46926842 ~ 46927714 (+) True G514464
TU583628 other downstream 114871 47022294 ~ 47023092 (+) True G514499
TU583803 other downstream 395760 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 399015 47306438 ~ 47320050 (+) True G514665
TU583904 other downstream 606363 47513786 ~ 47516710 (+) True LOC118964881

Expression Profile