RNA id: TU583578


Basic Information

Item Value
RNA id TU583578
length 1455
lncRNA type read_through
GC content 0.34
exon number 3
gene id G514453
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46933793 ~ 46998665 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatgtgggaagagttttactgcATCAAGCCATCAGattgtacaccagagaacacacacaggagagaaaccatatagctgtaatcaatgtgggaagagttttaaaaGATCTAACCATCTTATTTTACaccaaagaacacacacaggagagaaaccttatagctgtgctcaatgtgggaagagttttattaTGTCTGGTCAGCTGAAGGCACACcatagaacacacacaggagagaaaccttatagctgtattcaatgtgggaagagttttgctagATCTAGCCGTTTAACtgcacaccagagaacacacacagtaaagaaatctcatagctgtaatcaatgtgggaagagatactCTCATAAAAGATCTCTGactaaacatcagaaaatacatggaGTTGTTTCACGATATCAATGAATTAATGTCACAGTGTAGAATATTAACACATTGTAggaggagtattttaatgatgtcacaatgtagaacccTAAATGTTTGCCCCCTTATCAATTGATTTCAGCATGATATTAGCCTTGGgaaaaatccaggctctgaattgaGAGAGTACTATTTATGAGATTTAACAAAAAGTGACTAACAAGAAAAGAGTTGTTACACTTACCACATTGGTGACGCtcttgaatcaaaatgcaacacttcaaaatgtagcgatttgttttctacaaattgtcctctaaccagggatgtacacattattcccagattccgtgtggtttttgagctgttagttttaacaggatgTGCAACCTCATCTCCCTTGTCTCGCACAATTGATTTCAACATGTAATCGATGAGTGATGACAAATAAGTGTTGCGTTCCTTTATTTAGCGACCCCTAAACTTAAATGCATCTctccaaaatgtagctgactgtcttctgcatgttgtcctctaaccagtgaggtgAAAGATATTTCCTtttttcatgtgttttttttttagttGTGTTTCAAGTTTTCGCTTTTGGTGCTTGTATAAGTAAATACAAGTAATGTGATTATTGTGGCAGATGTTTGTGTAGATAGTACATTTTATGTTAAGGATTTCAATTTATCATAAACTTTTTCTGACATTGGGGCTATCCACCTAGCAAAATGTTGAAAACATACAATATAAGTTTGGTTTTAGTTGAAagtgaaagttgaaaagaactatTTAATTTCAACGTACTTGCAGCCTATACACATGGTCGCAGTATAATAAATTGGTCTATAATCAATTTTATGAACAGTCCtacatcactccagtatttatTTACAACATTCAAGTGCTAAATGTCTTTATTCCAATAATGACGAAGCATGACTCAAATCACCTACAAATATTTCAATTTAGTTAATTATTGCTAATACATATTAACAAAGGGGTGTACATTTGGTTTTGATATTTCATATTTACAATTCATGTAACATTTAGTAATCATAATTATTTATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583593 lncRNA upstream 665 46932202 ~ 46933128 (+) True G514465
TU583588 lncRNA upstream 4007 46929398 ~ 46929786 (+) True G514460
TU583572 lncRNA upstream 13239 46919624 ~ 46920554 (+) True G514449
TU583563 lncRNA upstream 18533 46914969 ~ 46915260 (+) True G514440
TU583554 lncRNA upstream 20939 46912602 ~ 46912854 (+) True G514436
TU583583 lncRNA downstream 25100 47001667 ~ 47002143 (+) True LOC110526907
TU583615 lncRNA downstream 28739 47005306 ~ 47005664 (+) True G514486
TU583616 lncRNA downstream 29274 47005841 ~ 47006197 (+) True G514487
TU583622 lncRNA downstream 40043 47016610 ~ 47016813 (+) True G514493
TU583623 lncRNA downstream 40420 47016987 ~ 47017236 (+) True G514494
XM_036980258.1 mRNA upstream 33789 46722960 ~ 46900004 (+) False rasgrf2b
XM_036980260.1 mRNA upstream 33789 46722960 ~ 46900004 (+) True rasgrf2b
XM_021606650.2 mRNA upstream 224831 46576224 ~ 46708962 (+) False msh3
XM_036980263.1 mRNA downstream 17029 46993596 ~ 46998667 (+) False LOC110526907
XM_036980264.1 mRNA downstream 17029 46993596 ~ 47004352 (+) False LOC110526907
XR_005052126.1 mRNA downstream 17029 46993596 ~ 47004352 (+) False LOC110526907
XM_036979106.1 mRNA downstream 134245 47110812 ~ 47119011 (+) False si:dkey-88e18.2
NM_001124392.1 mRNA downstream 134483 47111050 ~ 47117959 (+) True si:dkey-88e18.2
TU583592 other upstream 6079 46926842 ~ 46927714 (+) True G514464
TU582823 other upstream 32670 46900561 ~ 46901123 (+) True G513745
TU582564 other upstream 573208 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 743501 46187000 ~ 46190292 (+) True LOC110526042
TU581924 other upstream 1297543 45635589 ~ 45636250 (+) True G512912
TU583628 other downstream 45727 47022294 ~ 47023092 (+) True G514499
TU583803 other downstream 326616 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 329871 47306438 ~ 47320050 (+) True G514665
TU583904 other downstream 537219 47513786 ~ 47516710 (+) True LOC118964881
TU584269 other downstream 973439 47950006 ~ 47952254 (+) True G515069

Expression Profile