RNA id: TU583587


Basic Information

Item Value
RNA id TU583587
length 4095
lncRNA type intronic
GC content 0.48
exon number 2
gene id G514459
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46968924 ~ 46973262 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACCCTTTGtcaacacggagccccgccgatccatcaagACTGGTCTGCCGACGGTATGCCCTCAACCGGCCTTTGCAGTACGTTGGTGAAGAccttgtcccgaagctagcaccagttagcctcgagccaggcacatctcccggctagcGTAGTAATGACTACCTAACGGCTTCCCTGGTTCATATATTCCTGTTGACTGGACCCtacgatcacttggctacatagctgatgcctgctggattgttcattaatcacgggtctccattttgtttatctgtcggccccagcctcaaactcaggccctgtgtgtagttaactgaccctctctgcccattcattgccAGTTTACCTGTTGTCGTAGCTAATTaactctcccaatcaacacctgtgattgctttatgcctcgctttatgtctctctctaatgtccatatgccttgtatactgttgtttatggtagttatcattgttttattttactgcggagcccctagtcccactcaacatggcTCAGagagctcttttgtcccacctcccacacatgcggtgacctcacctagcAGCACTagtgcctccagagatgcaacctctcttatcgtcactcaatgcctaggtttacctccactgtacccgcaccctaccatacccctgtctgtacattatgccttgaatctatcctaccacgcccagaaatctgctcattttattctctgttccaaacgcactagatgaccagtcctgatagcctttagccgtaccctcatcctactactctgttcctcgggtgatgtagaggttaacccaggacctgtgtgtccccaggcactctcatttgttgacttctgtaatcgaaaaagccttggtttcatgcatgttaagaTCAGAATCcttctccctaagtttgttttactcactgctttagcacactccgcctaCCTtaatgtccttgccgtgtctgcaTCCTGGCTTAAGAAGGCAACCAAACATTCTGAATTTTCATCCTCAAccacaacattttccgtcaagattgCAACTCCTCTCTTTTTGACAGTTCTATCTACTGCAGAGatggcctgcaaagttctgtcatactttccatgttcatgcccaaacagttcgagcttctaatttaaaaaatgaatctctccagaaataagtctcactgttgccgcctgttatagacccccctcggCTCCCATcggtgccctggacaccatatgtgaattgattgccccctatCTATCTTCAGCGTTCGTTCTATTAAGTGACCTAACcagggatatgcttaacaccccggccgtcctacaatccaagctagatgccctcaatctcacacaaattatcaaggaacccaccaggtacaaccctaaatccataaacatgggcaccctaatagatattatcctgaccaacttgccctccaaatacacctctgctgttttaaatcaggatctcagcgatcgtTGCCTGCATCCgatatgggtccgcggtcaatagaccacccctcatcactgtcaaacgctccctaaaacacttctgcaaacaggtctttctaatcgacctggcccgggtatcctggaaggatttttacgtcatcccgtcagtagaggatgcctggttgttctttaaaagtaatttcctcaccatcttaaataagcatgcccctttctaagaacagatatagcccttggttcactccagacctgactgccctcgaccagcacaaaaacatcctgtggcgtactgcactagcatcaaatagtccccgtgatatgcatcTTTTCAGacaagtcaggaaccaatacactcagtcagttaggaaagcaaaggctagctttttcgaacagaaatgtgcatcctgtagctctaacttcaaaagttctgggacactgtaaagtccatggagaagaagagcacctcatcccagttgcccactgcactgaggctaggaaacactgtcaccaccgataactccacgataatcgagaatttcaagaagcatttctctatggctgaCCAGagactcttaaatagaacctggaccagctggctaccccaaccccggccaacagctccgcactcCCGCAGCTActttcccaagcctccccagcttctccttcacccaaatccagatagctgatgttcttaaagagctgcaaaacctggacctgtacaaatctgctgggctagacaatctggaccctctgtttctaaaattatctgccgccattgtggcaacccctattactagtctgttcaacctctttcctATCTTCCgaattcctaaagattggaacgctgccgtggtcatcccactcttcaaaggggtgacactctagacccaaactgttacagacctatatccatcctgccctgcctttctaaagtcttcgaaagccatgttaacaaacagatcactgaccatttcaaatcccaccgtaccttctcaaatcaaatcaaatttatttaaatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactcccatgaaaggccaaaacctaggaagaaacctagagaggaatatGTGCTatggctatgtggggtggccagtcctcttctggctgtgcccggtggagattataacagaacatggccaagatgttcaaatgttcataaatgaccagcatggtcgaataataaaaaggcagaacagttgaaactggagcatcagcacggccaggtggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcctagggctcaggtcctccgagagagagaaagaaagagagaaggagagaattagagaacgcacacttagattcacacaggacaccgaataggacaggagaagtactctagatataacaaactgaccctagccccccgacacataaactactgcagcataaatactggaggctgggacaggaggggtcaggagacactgtggccccatccgaggacacccccggacagggccaaacaggaaggatataacccacccactttgccaaagcacagcccccacaccactagagggatatcttcaaccaccaacttaccatcctgagacaaggctgagtatagcccacatagacctccgccacggcacaacccaaggggggcggggggcaccaacccagacaggatgaccacatcagtgaatcaacccactcaggtgacgtaCCCCCTGTGCAATCCGGTGTTCGAGCTGgccacgggtgcacctcagccactctcaaagtactaaacgatatcataaccgccatcgataaaagacagtactgtgcagccgtcttcatcgacctggccaaggctttcgactctgtcaatcaccgtattcttatcggcagactcaacagccgaTAATAACAACCGATCAATCaacaaccgatcgctgcccacacccgcccgactagcatcactactctggacggttctaacttagaatatgtggacaactacaatacataggtgtctggttagactataaactctccttctagactaATATTtagcatttccaatccaaaattaaatctagaaccggattcctatttcgcaacaaagcctccttcactcacgctgccaaacataccctggtaaaacttgactatcctaccgatccttaacttcggtgatgtcatttacaaaatagcctccaacactctactcagcaaactggatgcagtctatcacaatgccatccgttttgtcactaaagccccatataccacccactactgcgacctgtatgctcttgtctgctggccctcgctacatattcgtcaccaaacccactggccccaggtcatctataagtctttgctaggtaaagctcctccttaactcagctcactggtaaccatagcaacacccacccatagcacacgctccaggaggtatatctcactggtcatccccaaagccaacacctcctttggccgcctttcctacagttctctgctgccaatgactggaacgaattgcaaaaatcgctgaagttggagaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583593 lncRNA upstream 35796 46932202 ~ 46933128 (+) True G514465
TU583588 lncRNA upstream 39138 46929398 ~ 46929786 (+) True G514460
TU583572 lncRNA upstream 48370 46919624 ~ 46920554 (+) True G514449
TU583563 lncRNA upstream 53664 46914969 ~ 46915260 (+) True G514440
TU583554 lncRNA upstream 56070 46912602 ~ 46912854 (+) True G514436
TU583583 lncRNA downstream 28405 47001667 ~ 47002143 (+) True LOC110526907
TU583615 lncRNA downstream 32044 47005306 ~ 47005664 (+) True G514486
TU583616 lncRNA downstream 32579 47005841 ~ 47006197 (+) True G514487
TU583622 lncRNA downstream 43348 47016610 ~ 47016813 (+) True G514493
TU583623 lncRNA downstream 43725 47016987 ~ 47017236 (+) True G514494
XR_005052125.1 mRNA upstream 33647 46931084 ~ 46935277 (+) True LOC118964876
XM_036980258.1 mRNA upstream 68920 46722960 ~ 46900004 (+) False rasgrf2b
XM_036980260.1 mRNA upstream 68920 46722960 ~ 46900004 (+) True rasgrf2b
XM_021606651.2 mRNA upstream 259962 46576224 ~ 46708962 (+) False msh3
XM_036980263.1 mRNA downstream 20334 46993596 ~ 46998667 (+) False LOC110526907
XM_036980264.1 mRNA downstream 20334 46993596 ~ 47004352 (+) False LOC110526907
XR_005052126.1 mRNA downstream 20334 46993596 ~ 47004352 (+) False LOC110526907
XM_036979106.1 mRNA downstream 137550 47110812 ~ 47119011 (+) False si:dkey-88e18.2
NM_001124392.1 mRNA downstream 137788 47111050 ~ 47117959 (+) True si:dkey-88e18.2
TU583592 other upstream 41210 46926842 ~ 46927714 (+) True G514464
TU582823 other upstream 67801 46900561 ~ 46901123 (+) True G513745
TU582564 other upstream 608339 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 778632 46187000 ~ 46190292 (+) True LOC110526042
TU581924 other upstream 1332674 45635589 ~ 45636250 (+) True G512912
TU583628 other downstream 49032 47022294 ~ 47023092 (+) True G514499
TU583803 other downstream 329921 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 333176 47306438 ~ 47320050 (+) True G514665
TU583904 other downstream 540524 47513786 ~ 47516710 (+) True LOC118964881
TU584269 other downstream 976744 47950006 ~ 47952254 (+) True G515069

Expression Profile