RNA id: TU583615


Basic Information

Item Value
RNA id TU583615
length 359
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G514486
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47005306 ~ 47005664 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctacattaactaacattcCCGTCAACTGTACATGTTTTTTGCATGATTAGTTATCCCTTACATTTGTTTCCATCCTAGTATTTCTGTCAGTCATCTTTGAtccagttcagttctgtgtaggggtacccctctctcctggtaTTTCTCTCCGCCGTCTTTGATCCAGTTCAGTTCTGTGGAGGGGTACCCCTCTCTCCTAGTACTTCTGTCCACCATCTTAGATCCACTTCAGTTCTGTGTAGGGGTACCACTCTCTCCTAGTTTTTCTGTCCatcatctttgctgaagaaagtccaACAGTCACTAGCGAAGCAGCAGCCTCCCCTGGTCCTAGTGCCGTACCGGTAGGAAGTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583583 lncRNA upstream 3163 47001667 ~ 47002143 (+) True LOC110526907
TU583580 lncRNA upstream 6641 46934968 ~ 46998665 (+) True G514453
TU583581 lncRNA upstream 27195 46935543 ~ 46978111 (+) True LOC110526054
TU583578 lncRNA upstream 28739 46933793 ~ 46976567 (+) False G514453
TU583587 lncRNA upstream 32044 46968924 ~ 46973262 (+) True G514459
TU583616 lncRNA downstream 177 47005841 ~ 47006197 (+) True G514487
TU583622 lncRNA downstream 10946 47016610 ~ 47016813 (+) True G514493
TU583623 lncRNA downstream 11323 47016987 ~ 47017236 (+) True G514494
TU583624 lncRNA downstream 11646 47017310 ~ 47017547 (+) True G514495
TU583625 lncRNA downstream 12583 47018247 ~ 47018559 (+) True G514496
XM_036980264.1 mRNA upstream 954 46993596 ~ 47004352 (+) False LOC110526907
XR_005052126.1 mRNA upstream 954 46993596 ~ 47004352 (+) False LOC110526907
XM_036980263.1 mRNA upstream 6639 46993596 ~ 46998667 (+) False LOC110526907
XM_036980261.1 mRNA upstream 27178 46957502 ~ 46978128 (+) False LOC110526054
XM_021606657.2 mRNA upstream 27178 46957507 ~ 46978128 (+) False LOC110526054
XM_036979106.1 mRNA downstream 105148 47110812 ~ 47119011 (+) False si:dkey-88e18.2
NM_001124392.1 mRNA downstream 105386 47111050 ~ 47117959 (+) True si:dkey-88e18.2
XM_021606654.2 mRNA downstream 145236 47150900 ~ 47217434 (+) False LOC110526052
XM_036980265.1 mRNA downstream 145498 47151162 ~ 47217434 (+) True LOC110526052
XM_036980267.1 mRNA downstream 389703 47395367 ~ 47398426 (+) True LOC118964877
TU583592 other upstream 77592 46926842 ~ 46927714 (+) True G514464
TU582823 other upstream 104183 46900561 ~ 46901123 (+) True G513745
TU582564 other upstream 644721 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 815014 46187000 ~ 46190292 (+) True LOC110526042
TU581924 other upstream 1369056 45635589 ~ 45636250 (+) True G512912
TU583628 other downstream 16630 47022294 ~ 47023092 (+) True G514499
TU583803 other downstream 297519 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 300774 47306438 ~ 47320050 (+) True G514665
TU583904 other downstream 508122 47513786 ~ 47516710 (+) True LOC118964881
TU584269 other downstream 944342 47950006 ~ 47952254 (+) True G515069

Expression Profile