RNA id: TU583953


Basic Information

Item Value
RNA id TU583953
length 877
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G514776
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47010761 ~ 47011827 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGACTTCTTGAATTCTGAATTCATTTAGACAACCATTTGACTTCGGGTAAATTGACACCTGACTCAAATTACTTAAAAGATTCTAACTTGTTGGATCTGAGAAGTAACTCTCCGATATACCGTTTAACTATCGAACAGCTGATGCAAATATATCCAGAGAGTTCTCTGTAGCCTCTAGATTGAGCTCAGCATCTCGACCTCGTTGCGAGCCACTGACACTGCGGTAGTTCAACGGGTTTAACTATTGAACAGTTGTTTTGTCGCTTTGCGCCAGGTACGTGGGTGCTGATGCAAATATATCCAGAGAGTTCTCTGTATCCTCTCGATTGAGCTCAGTATCGCGACCTCGTTGCGGACACAGACTTTTTGGTATTCCATTTGGGGCAGGGAATCACCAGCGGGTTCTCCCATCCGAGCCAAACTTGAATCTCTCAATTTAGTAAAGCACCGACTTCAAGTCAACctctcagccagtagaggggagtcGCTACTAACTAAATTAAAAAATAACTCTGACCGATTGAAACTCTGCTCCTGATCTCGTGGGTCTCCTCGTCATCTCTCAAAGGTAATTAAATAACTATTATAAGTATTTAAATATAGAGATAAGTGTTATCATTGTACCAGGCATTTTATAAGAGCATTAAGTCATTTGCATGTTTTTGATTAACGCTGTGTGTGACCGAGTAACAAATTGTGTATTTTGAAGTGTGTTTGATTGTAAAAGACAAAAAACAGAGTGTTTTCAAAAATAAACGGTAGTCTTATTTTGTCTCGAGAAAAAAGTTCTCTCAAAGACAGTTAACGGCACGGGAGATAACAACTCTGACACTCCCCGCTACCGGGACACTGGAAACGGGGATCAATGCTCTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583942 lncRNA downstream 6404 47004110 ~ 47004357 (-) True G514769
TU583939 lncRNA downstream 17474 46957198 ~ 46993287 (-) True G514766
TU583915 lncRNA downstream 30443 46971364 ~ 46980318 (-) False LOC110526055
TU583914 lncRNA downstream 30443 46975116 ~ 46980318 (-) False LOC110526055
TU583916 lncRNA downstream 30443 46979493 ~ 46980318 (-) True LOC110526055
TU583909 lncRNA upstream 22003 47033830 ~ 47035938 (-) True G514740
TU583910 lncRNA upstream 31140 47042967 ~ 47043364 (-) True G514741
TU583965 lncRNA upstream 49082 47060909 ~ 47061207 (-) True G514787
TU583966 lncRNA upstream 51381 47063208 ~ 47070086 (-) True G514788
TU583984 lncRNA upstream 76648 47088475 ~ 47088734 (-) True G514804
XR_002473865.2 mRNA downstream 29984 46976395 ~ 46980777 (-) False LOC110526055
XM_021606643.2 mRNA downstream 539629 46461363 ~ 46471132 (-) True rnf215
XM_021606642.2 mRNA downstream 539630 46461363 ~ 46471131 (-) False rnf215
XM_021606655.2 mRNA upstream 33666 47045493 ~ 47056805 (-) True utp15
XM_036981752.1 mRNA upstream 335007 47346834 ~ 47349012 (-) True LOC118965029
XM_036981754.1 mRNA upstream 339884 47351711 ~ 47353889 (-) True LOC118965030
XM_036980273.1 mRNA upstream 495336 47507163 ~ 47511010 (-) True LOC118964878
XR_005052130.1 mRNA upstream 521989 47533816 ~ 47534526 (-) True LOC118964883
TU583552 other downstream 99811 46910658 ~ 46910950 (-) True G514434
TU583053 other downstream 580401 46370690 ~ 46430360 (-) True LOC110526044
TU583050 other downstream 649875 46359888 ~ 46360886 (-) True apba1a
TU581656 other downstream 1734374 45274638 ~ 45276387 (-) True znrf3
TU580172 other downstream 2800096 44209465 ~ 44210665 (-) True nf2a
TU583955 other upstream 4335 47016162 ~ 47016496 (-) True G514777
TU584295 other upstream 962966 47974793 ~ 47976975 (-) True G515094
TU584332 other upstream 1252166 48263993 ~ 48264977 (-) True G515122
TU584340 other upstream 1281019 48292846 ~ 48297527 (-) False LOC110512142
TU584341 other upstream 1281019 48292846 ~ 48293454 (-) False LOC110512142

Expression Profile