RNA id: TU583624


Basic Information

Item Value
RNA id TU583624
length 238
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G514495
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47017310 ~ 47017547 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCTGTGCTTTGTTCTGTACTCCCCCAACTTCATATTTCCTGTGAAATATAAGAGGGAGAGCAtcttttagtttattttttaaccattggGTTTCTGAATTTGGATAGGCCCTCTCCAGGGTCTGATCCAAATACCAGTTTTACCCTAGCCAGGAATGATTTCTTAGGTGGGCTTTGTTCTCTTTTGAGTGCTGCCTTTTGTTTACCTTTTCTCTCTCCAGCAGCACTATCTCTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583623 lncRNA upstream 74 47016987 ~ 47017236 (+) True G514494
TU583622 lncRNA upstream 497 47016610 ~ 47016813 (+) True G514493
TU583616 lncRNA upstream 11113 47005841 ~ 47006197 (+) True G514487
TU583615 lncRNA upstream 11646 47005306 ~ 47005664 (+) True G514486
TU583583 lncRNA upstream 15167 47001667 ~ 47002143 (+) True LOC110526907
TU583625 lncRNA downstream 700 47018247 ~ 47018559 (+) True G514496
TU583585 lncRNA downstream 16326 47033873 ~ 47040194 (+) True G514457
TU583589 lncRNA downstream 23441 47040988 ~ 47041441 (+) True G514461
TU583661 lncRNA downstream 61126 47078673 ~ 47078880 (+) True G514530
TU583672 lncRNA downstream 85805 47103352 ~ 47103562 (+) True G514541
XM_036980264.1 mRNA upstream 12958 46993596 ~ 47004352 (+) False LOC110526907
XR_005052126.1 mRNA upstream 12958 46993596 ~ 47004352 (+) False LOC110526907
XM_036980263.1 mRNA upstream 18643 46993596 ~ 46998667 (+) False LOC110526907
XM_036980261.1 mRNA upstream 39182 46957502 ~ 46978128 (+) False LOC110526054
XM_036979106.1 mRNA downstream 93265 47110812 ~ 47119011 (+) False si:dkey-88e18.2
NM_001124392.1 mRNA downstream 93503 47111050 ~ 47117959 (+) True si:dkey-88e18.2
XM_021606654.2 mRNA downstream 133353 47150900 ~ 47217434 (+) False LOC110526052
XM_036980265.1 mRNA downstream 133615 47151162 ~ 47217434 (+) True LOC110526052
XM_036980267.1 mRNA downstream 377820 47395367 ~ 47398426 (+) True LOC118964877
TU583592 other upstream 89596 46926842 ~ 46927714 (+) True G514464
TU582823 other upstream 116187 46900561 ~ 46901123 (+) True G513745
TU582564 other upstream 656725 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 827018 46187000 ~ 46190292 (+) True LOC110526042
TU581924 other upstream 1381060 45635589 ~ 45636250 (+) True G512912
TU583628 other downstream 4747 47022294 ~ 47023092 (+) True G514499
TU583803 other downstream 285636 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 288891 47306438 ~ 47320050 (+) True G514665
TU583904 other downstream 496239 47513786 ~ 47516710 (+) True LOC118964881
TU584269 other downstream 932459 47950006 ~ 47952254 (+) True G515069

Expression Profile