RNA id: TU583625


Basic Information

Item Value
RNA id TU583625
length 313
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G514496
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47018247 ~ 47018559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCTAGTGTGCAGTTGGTCATGGTGTTGCAGTTGCAGCTGCCACACGTCTGAACTCTTCCATACCTGCACCTATATTCTCCTGAGGCTCCATTAGAGCACACCTCTAGTTGCCTGATGCTTAGCTCAGCGGGCCCTTCGTATTGCATATCGCCAGTGGGCTCATTGCATACGTCACAAGGGACACACTTCAGTCTGCTTGAGCCAGGTAGACCTGTCAGAACGCTTTGCTCCCAGACTAATCTTCCTGTGCTCCCTCCTTTGAGGCCCTGTCTGGCTAATTCCTCATGTCTAATGTGTCTGCCTACCCAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583624 lncRNA upstream 700 47017310 ~ 47017547 (+) True G514495
TU583623 lncRNA upstream 1011 47016987 ~ 47017236 (+) True G514494
TU583622 lncRNA upstream 1434 47016610 ~ 47016813 (+) True G514493
TU583616 lncRNA upstream 12050 47005841 ~ 47006197 (+) True G514487
TU583615 lncRNA upstream 12583 47005306 ~ 47005664 (+) True G514486
TU583585 lncRNA downstream 15314 47033873 ~ 47040194 (+) True G514457
TU583589 lncRNA downstream 22429 47040988 ~ 47041441 (+) True G514461
TU583661 lncRNA downstream 60114 47078673 ~ 47078880 (+) True G514530
TU583672 lncRNA downstream 84793 47103352 ~ 47103562 (+) True G514541
TU583677 lncRNA downstream 89674 47108233 ~ 47181067 (+) True G514545
XM_036980264.1 mRNA upstream 13895 46993596 ~ 47004352 (+) False LOC110526907
XR_005052126.1 mRNA upstream 13895 46993596 ~ 47004352 (+) False LOC110526907
XM_036980263.1 mRNA upstream 19580 46993596 ~ 46998667 (+) False LOC110526907
XM_036980261.1 mRNA upstream 40119 46957502 ~ 46978128 (+) False LOC110526054
XM_036979106.1 mRNA downstream 92253 47110812 ~ 47119011 (+) False si:dkey-88e18.2
NM_001124392.1 mRNA downstream 92491 47111050 ~ 47117959 (+) True si:dkey-88e18.2
XM_021606654.2 mRNA downstream 132341 47150900 ~ 47217434 (+) False LOC110526052
XM_036980265.1 mRNA downstream 132603 47151162 ~ 47217434 (+) True LOC110526052
XM_036980267.1 mRNA downstream 376808 47395367 ~ 47398426 (+) True LOC118964877
TU583592 other upstream 90533 46926842 ~ 46927714 (+) True G514464
TU582823 other upstream 117124 46900561 ~ 46901123 (+) True G513745
TU582564 other upstream 657662 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 827955 46187000 ~ 46190292 (+) True LOC110526042
TU581924 other upstream 1381997 45635589 ~ 45636250 (+) True G512912
TU583628 other downstream 3735 47022294 ~ 47023092 (+) True G514499
TU583803 other downstream 284624 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 287879 47306438 ~ 47320050 (+) True G514665
TU583904 other downstream 495227 47513786 ~ 47516710 (+) True LOC118964881
TU584269 other downstream 931447 47950006 ~ 47952254 (+) True G515069

Expression Profile