RNA id: TU583585


Basic Information

Item Value
RNA id TU583585
length 4164
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G514457
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47033873 ~ 47040194 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccacaggttataaacggaaaatgacgtcagcgttttctaaatgttccgtctcttcttgacactggtagaaaggctctatagatctcaagccttccctcctcgcctagagccaaggtcagtcagtgtagataagcattctagacagtctggagatagtccGTCCCTGCCATCTGGAGTTCATTTATTTGTACCAAGGAATAGGCCATCATTGTTCTAAACTCTTGACTACATTATATTCAATActgggagcaagagagaaaattcatacatgtacagtaacataACAGTATTCGGATTattcagtcctgattgaaatgtatacagaattagtcatcattgataaaaattcccttaacatatCCACCCTTTGATTAAATATTATACATTCAATCACACATTGTAGTTATATTGTAATATTAAAAAGCCTATTTTTATTAGAGATATTTCTTGTcatcaaaacatcacctaaacataaccccatACTTGCATTCGCCATAACCGTTTCTCAGGCCTACATCAGAATCATAACTCTTCTTATCAGGATTTTCGTTACAATCTTCATAAAAAAACAGTCTAATATTGAGATGGGATGCAACCTAGCCTCCCTAAACATCAAAAATGGTCTCTTGAAACATAAATTCCCCGCAACTGAAGGATCCAGATTCGTCCACTTGTCCTGTAGACATACAATCAGCACTCCGCGGGTCTGAACCTGGAATCCCCTGGTACCTCACCATCTATTGTCATCGATTTCTCCAGAGTCCTGGAAATAGGGTCTCATATACAGGGAATTAGACAACAGCCCCATAAAACTATACAGTCACACAGGTGAATGTAGCCCATAATACAGTGATCATAATATTTTTTCCCATTTTCTGAACATACTATCAAACCCAATTAGTCAGAGAAGTATCCACCCAAGAGTTTTCTGCCAAACCGTGAGCCAGGGTGGTCAAACCAGCTGAGGCTTCGGGCACTGATTCGTCCGGAGCTGTGTTATTTGGGATGTAAGCACAAACATGGTCCCGATAATCACGCATACTTCTCCCTTTTCAGCCATTAACATATCTAATGCAATTCTATTCTGCCAAGCCATCCGGCTGGTTGCTTCAGTCTGTTCTGCAAAACCTTTAATAGCATCTCTGGTATAATTGTTAAAGCGCTgttgattataataaatataattaatCCAGTCCTCGTCCGTGTAACCCCAATGTTATCAATGTATACTTTGTCAATAAGAGACCCGGATGGAGTAGCTCTTTTCTCCCATCTGGCTATACTTCATGTCTTGGTGTTGAATGAGTGTGAAAGGCATTCTCAAATGTACAATGGGGCATAATCCTGTCCAATCTGTCGGTAAAACCTCGCCCTGACATCATTTCCCAAGAGTACTGTACCGGGCCAAACGGTAATAATCTCCTCCGGTCACTGTAAAGGGAGGAAGTCTTGATTTAAGGGGAACTTGGGGATATAAATAGTGCAAATCAATACAACTGTCATTATCTGGCATTCCTGCTTTCGTGAACAGCTTTACCATACCGGCCTAAACTCCTCTACCCAGAACCATACTAGGGTGTCGACCAAGACCTGGTCATATCCATACCACAACCCTAGATCCTCCTTCATTTCTGTTTAAAGGGTTAGGCGTATCTTTATGcaatacatccctctctcctgattACAATCAAAAACTCTCACCTTCCCTATACTCTACCTTCTTCCATACTGGGTGAGTGGATTcatatagccctctctctccaAATGAGCTATGACCTGTGTCCACGATCAATATGGGAACCTGCACCGATATATGCCATAATGGCTCAGAGTCCTAGACTGCCATGTAGTTAGAGACTCCATTTTGGTCTACATAAAACTCCATTGAGAGATCCTTCCCAACTTCCTGTCTACCCAGATCTAGGGATCTCTTATGCTTATTTTGGAACAAAATCCTCATCGTCTAAACCATGGGTCAAATTACCACTCTCCGCATACTCAAGTAGGACGTGCTGTATCAGGAATATGTCACCCACGATAAGACAGCTCAGACGAACAGCTTCCATGTgaagccccaccctctccccgAGAACACATCACTTAGCAAGAGCCAGACACACCTTCACTTCTAAGAACAAAAACAGGGATGAAAAGACAGGAAGGATTTTcttcattcgagagatggcccccggaattctgttaattccagttctcctctcgaacactgtttattgttcgacagtgtcaCAGTGTCTTACCCTCCCGCCGTGCGATATGAATACaggtagctctttcagctagctgtcaccaggagtccttggtatggtccccccaacaagcctctgggactagattgagtgacttcacctgtagttcacctgtaatgcataaaatcctggacatacaggcttGGTTAACAAACATTTTCTCCTATGTTTTATCTGATTATATCTttaacttacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttctttttgtaaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagctaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgaaattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttcttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccaaccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggctcaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggcagcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttctccacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattTTCTTCCTACACTTTACAAGCCCTTTCCTTCAGGGATCCTCAGTATCCTATCTGACAATAACATGAATTTAATATATGTTGCATAGTGTGGAATACCTTATCTACAGTAATTTATCACCCCTATTTATTCTCAATGATAAATAACTATTTTCTGTTGTAATATCAAATCCATTATAGCCAATTCAAAAACTTCACAGCTAATATTGTAAATCAGCTTCAGTGATTCAAACAATAATTCTAAACCCCAAACTAACACTCCATTATAACTAATTTACCTTAAAATTAGTAACCCAACTGACCACAATTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583625 lncRNA upstream 15314 47018247 ~ 47018559 (+) True G514496
TU583624 lncRNA upstream 16326 47017310 ~ 47017547 (+) True G514495
TU583623 lncRNA upstream 16637 47016987 ~ 47017236 (+) True G514494
TU583622 lncRNA upstream 17060 47016610 ~ 47016813 (+) True G514493
TU583616 lncRNA upstream 27676 47005841 ~ 47006197 (+) True G514487
TU583589 lncRNA downstream 794 47040988 ~ 47041441 (+) True G514461
TU583661 lncRNA downstream 38479 47078673 ~ 47078880 (+) True G514530
TU583672 lncRNA downstream 63158 47103352 ~ 47103562 (+) True G514541
TU583677 lncRNA downstream 68039 47108233 ~ 47181067 (+) True G514545
TU583754 lncRNA downstream 197298 47237492 ~ 47237777 (+) True G514614
XM_036980264.1 mRNA upstream 29521 46993596 ~ 47004352 (+) False LOC110526907
XR_005052126.1 mRNA upstream 29521 46993596 ~ 47004352 (+) False LOC110526907
XM_036980263.1 mRNA upstream 35206 46993596 ~ 46998667 (+) False LOC110526907
XM_036980261.1 mRNA upstream 55745 46957502 ~ 46978128 (+) False LOC110526054
XM_036979106.1 mRNA downstream 70618 47110812 ~ 47119011 (+) False si:dkey-88e18.2
NM_001124392.1 mRNA downstream 70856 47111050 ~ 47117959 (+) True si:dkey-88e18.2
XM_021606654.2 mRNA downstream 110706 47150900 ~ 47217434 (+) False LOC110526052
XM_036980265.1 mRNA downstream 110968 47151162 ~ 47217434 (+) True LOC110526052
XM_036980267.1 mRNA downstream 355173 47395367 ~ 47398426 (+) True LOC118964877
TU583628 other upstream 10781 47022294 ~ 47023092 (+) True G514499
TU583592 other upstream 106159 46926842 ~ 46927714 (+) True G514464
TU582823 other upstream 132750 46900561 ~ 46901123 (+) True G513745
TU582564 other upstream 673288 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 843581 46187000 ~ 46190292 (+) True LOC110526042
TU583803 other downstream 262989 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 266244 47306438 ~ 47320050 (+) True G514665
TU583904 other downstream 473592 47513786 ~ 47516710 (+) True LOC118964881
TU584269 other downstream 909812 47950006 ~ 47952254 (+) True G515069
TU584412 other downstream 1511425 48551619 ~ 48587888 (+) False G515189

Expression Profile