RNA id: TU583589


Basic Information

Item Value
RNA id TU583589
length 454
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G514461
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47040988 ~ 47041441 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaaaacacTTTTACCAGCAAAAAGAAAAACTCACTACTATAATGCTTCAGATGGCAAACTTTCTCAGAGACTCACGTTTACATCTGTTAGTTCCTCAAGAAAAAAACCACTTGCCCCTGTTACGGATGTCTACGTATCAGGGGAAAAGCTcgaataaccaaattcaacctagctaatttcccgAAACATATGCCGTTATGTTTTTCTATAGAGGTTGCTTTTCAACTTTAAATACCCTAACATGGTCCACACAATGGAAATAGTGCTCAAATTCACTGGTGTTACATAAACAATCAAACCTGGAATCGACAAGCATTCGGAATCCATTATCACGATGTTTTACGATTCAGACatccagtctccctctcccatAGCCTAATCCAATCCAAATAAACGCCACAAATCTTATGATGCCCACCTAGCGTATCAGCTGCTAGTTTTTAGCATCTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583585 lncRNA upstream 794 47033873 ~ 47040194 (+) True G514457
TU583625 lncRNA upstream 22429 47018247 ~ 47018559 (+) True G514496
TU583624 lncRNA upstream 23441 47017310 ~ 47017547 (+) True G514495
TU583623 lncRNA upstream 23752 47016987 ~ 47017236 (+) True G514494
TU583622 lncRNA upstream 24175 47016610 ~ 47016813 (+) True G514493
TU583661 lncRNA downstream 37232 47078673 ~ 47078880 (+) True G514530
TU583672 lncRNA downstream 61911 47103352 ~ 47103562 (+) True G514541
TU583677 lncRNA downstream 66792 47108233 ~ 47181067 (+) True G514545
TU583754 lncRNA downstream 196051 47237492 ~ 47237777 (+) True G514614
TU583768 lncRNA downstream 214240 47255681 ~ 47256160 (+) True G514628
XM_036980264.1 mRNA upstream 36636 46993596 ~ 47004352 (+) False LOC110526907
XR_005052126.1 mRNA upstream 36636 46993596 ~ 47004352 (+) False LOC110526907
XM_036980263.1 mRNA upstream 42321 46993596 ~ 46998667 (+) False LOC110526907
XM_036980261.1 mRNA upstream 62860 46957502 ~ 46978128 (+) False LOC110526054
XM_036979106.1 mRNA downstream 69371 47110812 ~ 47119011 (+) False si:dkey-88e18.2
NM_001124392.1 mRNA downstream 69609 47111050 ~ 47117959 (+) True si:dkey-88e18.2
XM_021606654.2 mRNA downstream 109459 47150900 ~ 47217434 (+) False LOC110526052
XM_036980265.1 mRNA downstream 109721 47151162 ~ 47217434 (+) True LOC110526052
XM_036980267.1 mRNA downstream 353926 47395367 ~ 47398426 (+) True LOC118964877
TU583628 other upstream 17896 47022294 ~ 47023092 (+) True G514499
TU583592 other upstream 113274 46926842 ~ 46927714 (+) True G514464
TU582823 other upstream 139865 46900561 ~ 46901123 (+) True G513745
TU582564 other upstream 680403 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 850696 46187000 ~ 46190292 (+) True LOC110526042
TU583803 other downstream 261742 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 264997 47306438 ~ 47320050 (+) True G514665
TU583904 other downstream 472345 47513786 ~ 47516710 (+) True LOC118964881
TU584269 other downstream 908565 47950006 ~ 47952254 (+) True G515069
TU584412 other downstream 1510178 48551619 ~ 48587888 (+) False G515189

Expression Profile