RNA id: TU583672


Basic Information

Item Value
RNA id TU583672
length 211
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G514541
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47103352 ~ 47103562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttatattcttggcatgagtagcaggaagttgaaattgggcatgctatttatccaaaagtgaaaatgctgccccctataccttaagaagttaatgagaagggtgtgcttgaaaggatgcacacaactctgcaatgttgggttgtattggagagagtctcagtcttaaatcattttccacacacagtctgtgcctgtatatatttttcatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583661 lncRNA upstream 24472 47078673 ~ 47078880 (+) True G514530
TU583589 lncRNA upstream 61911 47040988 ~ 47041441 (+) True G514461
TU583585 lncRNA upstream 63158 47033873 ~ 47040194 (+) True G514457
TU583625 lncRNA upstream 84793 47018247 ~ 47018559 (+) True G514496
TU583624 lncRNA upstream 85805 47017310 ~ 47017547 (+) True G514495
TU583677 lncRNA downstream 4671 47108233 ~ 47181067 (+) True G514545
TU583754 lncRNA downstream 133930 47237492 ~ 47237777 (+) True G514614
TU583768 lncRNA downstream 152119 47255681 ~ 47256160 (+) True G514628
TU583779 lncRNA downstream 164057 47267619 ~ 47267921 (+) True G514639
TU583781 lncRNA downstream 165481 47269043 ~ 47269331 (+) True G514641
XM_036980264.1 mRNA upstream 99000 46993596 ~ 47004352 (+) False LOC110526907
XR_005052126.1 mRNA upstream 99000 46993596 ~ 47004352 (+) False LOC110526907
XM_036980263.1 mRNA upstream 104685 46993596 ~ 46998667 (+) False LOC110526907
XM_036980261.1 mRNA upstream 125224 46957502 ~ 46978128 (+) False LOC110526054
XM_036979106.1 mRNA downstream 7250 47110812 ~ 47119011 (+) False si:dkey-88e18.2
NM_001124392.1 mRNA downstream 7488 47111050 ~ 47117959 (+) True si:dkey-88e18.2
XM_021606654.2 mRNA downstream 47338 47150900 ~ 47217434 (+) False LOC110526052
XM_036980265.1 mRNA downstream 47600 47151162 ~ 47217434 (+) True LOC110526052
XM_036980267.1 mRNA downstream 291805 47395367 ~ 47398426 (+) True LOC118964877
TU583628 other upstream 80260 47022294 ~ 47023092 (+) True G514499
TU583592 other upstream 175638 46926842 ~ 46927714 (+) True G514464
TU582823 other upstream 202229 46900561 ~ 46901123 (+) True G513745
TU582564 other upstream 742767 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 913060 46187000 ~ 46190292 (+) True LOC110526042
TU583803 other downstream 199621 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 202876 47306438 ~ 47320050 (+) True G514665
TU583904 other downstream 410224 47513786 ~ 47516710 (+) True LOC118964881
TU584269 other downstream 846444 47950006 ~ 47952254 (+) True G515069
TU584412 other downstream 1448057 48551619 ~ 48587888 (+) False G515189

Expression Profile