RNA id: TU583768


Basic Information

Item Value
RNA id TU583768
length 480
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G514628
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47255681 ~ 47256160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaggaatgggccaaaattctcccaactcattgtgggaagcttgtggaaggctacccaaaacgtttgacacaagttaaacaatttaaaggcaatgctaccaaatactaattgagtgtatgttaacttctgacccactgggaatgtgatgaaagaaatacaagctgaaataaataattctctctactattattctgacatttcacattcttaaaataaagtggtgatcctaactgacttaagacagggaatttttactaggattaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaagtgtatgtaaaaacgttcgacttcaactgtattattctTTGTGGTGATTAAATCTATGTTCTTATGGTATTTCACATCAAACGTGGatcaatggttgtgtggtgaaagatgtctccaaacaaaatgaatgcacattaaaacctgttaaggatatggcagacatatgcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583754 lncRNA upstream 17904 47237492 ~ 47237777 (+) True G514614
TU583677 lncRNA upstream 74614 47108233 ~ 47181067 (+) True G514545
TU583672 lncRNA upstream 152119 47103352 ~ 47103562 (+) True G514541
TU583661 lncRNA upstream 176801 47078673 ~ 47078880 (+) True G514530
TU583589 lncRNA upstream 214240 47040988 ~ 47041441 (+) True G514461
TU583779 lncRNA downstream 11459 47267619 ~ 47267921 (+) True G514639
TU583781 lncRNA downstream 12883 47269043 ~ 47269331 (+) True G514641
TU583772 lncRNA downstream 25340 47281500 ~ 47284426 (+) True G514632
TU583796 lncRNA downstream 38715 47294875 ~ 47295076 (+) True G514656
TU583819 lncRNA downstream 74267 47330427 ~ 47339327 (+) True G514675
XM_021606654.2 mRNA upstream 38247 47150900 ~ 47217434 (+) False LOC110526052
XM_036980265.1 mRNA upstream 38247 47151162 ~ 47217434 (+) True LOC110526052
XM_036979106.1 mRNA upstream 136670 47110812 ~ 47119011 (+) False si:dkey-88e18.2
NM_001124392.1 mRNA upstream 137722 47111050 ~ 47117959 (+) True si:dkey-88e18.2
XR_005052126.1 mRNA upstream 251329 46993596 ~ 47004352 (+) False LOC110526907
XM_036980267.1 mRNA downstream 139207 47395367 ~ 47398426 (+) True LOC118964877
XM_036981755.1 mRNA downstream 165081 47421241 ~ 47424219 (+) True LOC110526909
XM_036980271.1 mRNA downstream 194685 47450845 ~ 47494971 (+) False LOC110526910
XM_036980270.1 mRNA downstream 196104 47452264 ~ 47494971 (+) False LOC110526910
XM_036980269.1 mRNA downstream 209157 47465317 ~ 47494972 (+) False LOC110526910
TU583628 other upstream 232589 47022294 ~ 47023092 (+) True G514499
TU583592 other upstream 327967 46926842 ~ 46927714 (+) True G514464
TU582823 other upstream 354558 46900561 ~ 46901123 (+) True G513745
TU582564 other upstream 895096 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 1065389 46187000 ~ 46190292 (+) True LOC110526042
TU583803 other downstream 47023 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 50278 47306438 ~ 47320050 (+) True G514665
TU583904 other downstream 257626 47513786 ~ 47516710 (+) True LOC118964881
TU584269 other downstream 693846 47950006 ~ 47952254 (+) True G515069
TU584412 other downstream 1295459 48551619 ~ 48587888 (+) False G515189

Expression Profile