RNA id: TU583779


Basic Information

Item Value
RNA id TU583779
length 303
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G514639
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47267619 ~ 47267921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaaaaacaaatggaattcactgaggaggatggtcctgcccttcctcctctgaggagcctccactgctaaCCAGTTCAGTGTCTGAGCCCACTTGCCTTATAGCCGATTAAAATAAAGAAACATTAAGAAAGCTTGTGTAACTGTATGCACTTGTCAGGCAGGACCATGGGGCCATGGGGCTCCTTAGTggcgcactgcatctcagtgctagagatgtcactacagacaccctgtttTGAATCCAGGTTGCATGACAACAagccgtgattaggagtcccgtAGGGTCCCACAGTGTCGGGTCc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583768 lncRNA upstream 11459 47255681 ~ 47256160 (+) True G514628
TU583754 lncRNA upstream 29842 47237492 ~ 47237777 (+) True G514614
TU583677 lncRNA upstream 86552 47108233 ~ 47181067 (+) True G514545
TU583672 lncRNA upstream 164057 47103352 ~ 47103562 (+) True G514541
TU583661 lncRNA upstream 188739 47078673 ~ 47078880 (+) True G514530
TU583781 lncRNA downstream 1122 47269043 ~ 47269331 (+) True G514641
TU583772 lncRNA downstream 13579 47281500 ~ 47284426 (+) True G514632
TU583796 lncRNA downstream 26954 47294875 ~ 47295076 (+) True G514656
TU583819 lncRNA downstream 62506 47330427 ~ 47339327 (+) True G514675
TU583832 lncRNA downstream 79540 47347461 ~ 47352548 (+) True G514684
XM_021606654.2 mRNA upstream 50185 47150900 ~ 47217434 (+) False LOC110526052
XM_036980265.1 mRNA upstream 50185 47151162 ~ 47217434 (+) True LOC110526052
XM_036979106.1 mRNA upstream 148608 47110812 ~ 47119011 (+) False si:dkey-88e18.2
NM_001124392.1 mRNA upstream 149660 47111050 ~ 47117959 (+) True si:dkey-88e18.2
XR_005052126.1 mRNA upstream 263267 46993596 ~ 47004352 (+) False LOC110526907
XM_036980267.1 mRNA downstream 127446 47395367 ~ 47398426 (+) True LOC118964877
XM_036981755.1 mRNA downstream 153320 47421241 ~ 47424219 (+) True LOC110526909
XM_036980271.1 mRNA downstream 182924 47450845 ~ 47494971 (+) False LOC110526910
XM_036980270.1 mRNA downstream 184343 47452264 ~ 47494971 (+) False LOC110526910
XM_036980269.1 mRNA downstream 197396 47465317 ~ 47494972 (+) False LOC110526910
TU583628 other upstream 244527 47022294 ~ 47023092 (+) True G514499
TU583592 other upstream 339905 46926842 ~ 46927714 (+) True G514464
TU582823 other upstream 366496 46900561 ~ 46901123 (+) True G513745
TU582564 other upstream 907034 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 1077327 46187000 ~ 46190292 (+) True LOC110526042
TU583803 other downstream 35262 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 38517 47306438 ~ 47320050 (+) True G514665
TU583904 other downstream 245865 47513786 ~ 47516710 (+) True LOC118964881
TU584269 other downstream 682085 47950006 ~ 47952254 (+) True G515069
TU584412 other downstream 1283698 48551619 ~ 48587888 (+) False G515189

Expression Profile