RNA id: TU583796


Basic Information

Item Value
RNA id TU583796
length 202
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G514656
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47294875 ~ 47295076 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cTTTCTGTATGAAAaggctagcctttgctttcctaactacCTGTGTATATTGgctcctaacttccctgaaaagttgcaaaccgcgggggctatttgatgctaatgcggtacgccacaggatgtttgtgctggtcaagggcagtcaggtctggagtgaaccaagggctatatctgttcctggttcaacattttttaaataggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583772 lncRNA upstream 10449 47281500 ~ 47284426 (+) True G514632
TU583781 lncRNA upstream 25544 47269043 ~ 47269331 (+) True G514641
TU583779 lncRNA upstream 26954 47267619 ~ 47267921 (+) True G514639
TU583768 lncRNA upstream 38715 47255681 ~ 47256160 (+) True G514628
TU583754 lncRNA upstream 57098 47237492 ~ 47237777 (+) True G514614
TU583819 lncRNA downstream 35351 47330427 ~ 47339327 (+) True G514675
TU583832 lncRNA downstream 52385 47347461 ~ 47352548 (+) True G514684
TU583833 lncRNA downstream 52561 47347637 ~ 47353169 (+) False G514685
TU583834 lncRNA downstream 52561 47347637 ~ 47353169 (+) True G514685
TU583870 lncRNA downstream 127227 47422303 ~ 47422634 (+) True G514709
XM_021606654.2 mRNA upstream 77441 47150900 ~ 47217434 (+) False LOC110526052
XM_036980265.1 mRNA upstream 77441 47151162 ~ 47217434 (+) True LOC110526052
XM_036979106.1 mRNA upstream 175864 47110812 ~ 47119011 (+) False si:dkey-88e18.2
NM_001124392.1 mRNA upstream 176916 47111050 ~ 47117959 (+) True si:dkey-88e18.2
XR_005052126.1 mRNA upstream 290523 46993596 ~ 47004352 (+) False LOC110526907
XM_036980267.1 mRNA downstream 100291 47395367 ~ 47398426 (+) True LOC118964877
XM_036981755.1 mRNA downstream 126165 47421241 ~ 47424219 (+) True LOC110526909
XM_036980271.1 mRNA downstream 155769 47450845 ~ 47494971 (+) False LOC110526910
XM_036980270.1 mRNA downstream 157188 47452264 ~ 47494971 (+) False LOC110526910
XM_036980269.1 mRNA downstream 170241 47465317 ~ 47494972 (+) False LOC110526910
TU583628 other upstream 271783 47022294 ~ 47023092 (+) True G514499
TU583592 other upstream 367161 46926842 ~ 46927714 (+) True G514464
TU582823 other upstream 393752 46900561 ~ 46901123 (+) True G513745
TU582564 other upstream 934290 46359956 ~ 46360585 (+) True G513501
TU582342 other upstream 1104583 46187000 ~ 46190292 (+) True LOC110526042
TU583803 other downstream 8107 47303183 ~ 47329244 (+) True G514662
TU583807 other downstream 11362 47306438 ~ 47320050 (+) True G514665
TU583904 other downstream 218710 47513786 ~ 47516710 (+) True LOC118964881
TU584269 other downstream 654930 47950006 ~ 47952254 (+) True G515069
TU584412 other downstream 1256543 48551619 ~ 48587888 (+) False G515189

Expression Profile