RNA id: TU583819


Basic Information

Item Value
RNA id TU583819
length 581
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G514675
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47330427 ~ 47339327 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actttactcaaaccagtgaatatcacttattataaatgagatcattaactatcagctcttggaatatccagggcctatactcttcacattttggttataaaacaacaaatccagaattgattaaaaacatcaagggacaggacatcataatcctactggaaacatggtgtcgtggagacatagatactcagtgtccctcaggctatagagaaagtttactaccatcaatcaaacataaaaatgttaaacggggccgagactcaggtggaatcatcatttggcataagcaggacttagcactgaatgaaatgaaaaaaggtaccactcacatttgactaaaacttaacaaaggtacaatctattgtgacaatgatgtatacatatgtgcagcttatgctcctccttcagattcatcatattatgatgatcagttttttgacaatctccagacagaaatcattacatttcaggcacagggtaaagtgcttctttgtggagatttcaatgcaagaacaggttctgagcctgactacactgatgcgggaggtaaccaccacatatttggacacacctctttgtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583796 lncRNA upstream 35351 47294875 ~ 47295076 (+) True G514656
TU583772 lncRNA upstream 46001 47281500 ~ 47284426 (+) True G514632
TU583781 lncRNA upstream 61096 47269043 ~ 47269331 (+) True G514641
TU583779 lncRNA upstream 62506 47267619 ~ 47267921 (+) True G514639
TU583768 lncRNA upstream 74267 47255681 ~ 47256160 (+) True G514628
TU583832 lncRNA downstream 8134 47347461 ~ 47352548 (+) True G514684
TU583833 lncRNA downstream 8310 47347637 ~ 47353169 (+) False G514685
TU583834 lncRNA downstream 8310 47347637 ~ 47353169 (+) True G514685
TU583870 lncRNA downstream 82976 47422303 ~ 47422634 (+) True G514709
TU583873 lncRNA downstream 85674 47425001 ~ 47519480 (+) False LOC118964881
XM_021606654.2 mRNA upstream 112993 47150900 ~ 47217434 (+) False LOC110526052
XM_036980265.1 mRNA upstream 112993 47151162 ~ 47217434 (+) True LOC110526052
XM_036979106.1 mRNA upstream 211416 47110812 ~ 47119011 (+) False si:dkey-88e18.2
NM_001124392.1 mRNA upstream 212468 47111050 ~ 47117959 (+) True si:dkey-88e18.2
XR_005052126.1 mRNA upstream 326075 46993596 ~ 47004352 (+) False LOC110526907
XM_036980267.1 mRNA downstream 56040 47395367 ~ 47398426 (+) True LOC118964877
XM_036981755.1 mRNA downstream 81914 47421241 ~ 47424219 (+) True LOC110526909
XM_036980271.1 mRNA downstream 111518 47450845 ~ 47494971 (+) False LOC110526910
XM_036980270.1 mRNA downstream 112937 47452264 ~ 47494971 (+) False LOC110526910
XM_036980269.1 mRNA downstream 125990 47465317 ~ 47494972 (+) False LOC110526910
TU583803 other upstream 1183 47303183 ~ 47329244 (+) True G514662
TU583807 other upstream 10377 47306438 ~ 47320050 (+) True G514665
TU583628 other upstream 307335 47022294 ~ 47023092 (+) True G514499
TU583592 other upstream 402713 46926842 ~ 46927714 (+) True G514464
TU582823 other upstream 429304 46900561 ~ 46901123 (+) True G513745
TU583904 other downstream 174459 47513786 ~ 47516710 (+) True LOC118964881
TU584269 other downstream 610679 47950006 ~ 47952254 (+) True G515069
TU584412 other downstream 1212292 48551619 ~ 48587888 (+) False G515189
TU585107 other downstream 1609290 48948617 ~ 48954291 (+) False LOC110526072
TU585255 other downstream 1844546 49183873 ~ 49187323 (+) True edf1

Expression Profile