RNA id: TU584250


Basic Information

Item Value
RNA id TU584250
length 246
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G515051
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47705511 ~ 47705885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtttaaacagagagggaccatcaccaaaatggcattctgaaatcaacacaaaaaatggcatcaccatagtctccagactgtgctgagttcaacgagaaaaattccaccataggaatgttcctaaggtcctcccgatctgaacaagcctaaccttgaccgtgtggcattaacccttcacagtaaaacagtgttttttgatctcacagattacagtgtcatctctccccataggaatacattgcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU584241 lncRNA upstream 32914 47672189 ~ 47672597 (+) True LOC118964879
TU584235 lncRNA upstream 161517 47543347 ~ 47543994 (+) True G515037
TU583901 lncRNA upstream 210612 47494242 ~ 47494899 (+) True LOC110526910
TU583900 lncRNA upstream 213468 47491488 ~ 47492043 (+) True G514732
TU583891 lncRNA upstream 238772 47451416 ~ 47466739 (+) False LOC110526910
TU584255 lncRNA downstream 3270 47709155 ~ 47709359 (+) True G515056
TU584256 lncRNA downstream 10153 47716038 ~ 47716868 (+) True G515057
TU584260 lncRNA downstream 16549 47722434 ~ 47722844 (+) True G515061
TU584338 lncRNA downstream 584326 48290211 ~ 48290564 (+) True G515127
TU584344 lncRNA downstream 609375 48315260 ~ 48315527 (+) True G515132
XM_036980274.1 mRNA upstream 30018 47671331 ~ 47675493 (+) False LOC118964879
XM_036980275.1 mRNA upstream 30018 47671331 ~ 47675493 (+) False LOC118964879
XM_036980278.1 mRNA upstream 30018 47671332 ~ 47675493 (+) False LOC118964879
XM_036980279.1 mRNA upstream 30018 47671620 ~ 47675493 (+) False LOC118964879
XM_036980276.1 mRNA upstream 30018 47671983 ~ 47675493 (+) False LOC118964879
XM_036980300.1 mRNA downstream 19746 47725631 ~ 48235995 (+) False LOC118964888
XM_036980301.1 mRNA downstream 247833 47953718 ~ 47955681 (+) False LOC118964889
XM_036980302.1 mRNA downstream 247833 47953718 ~ 47955681 (+) True LOC118964889
XM_036980293.1 mRNA downstream 292021 47997906 ~ 48003429 (+) False LOC110512140
XM_036980294.1 mRNA downstream 292286 47998171 ~ 48003429 (+) False LOC110512140
TU583904 other upstream 188801 47513786 ~ 47516710 (+) True LOC118964881
TU583803 other upstream 376267 47303183 ~ 47329244 (+) True G514662
TU583807 other upstream 385461 47306438 ~ 47320050 (+) True G514665
TU583628 other upstream 682419 47022294 ~ 47023092 (+) True G514499
TU583592 other upstream 777797 46926842 ~ 46927714 (+) True G514464
TU584269 other downstream 244121 47950006 ~ 47952254 (+) True G515069
TU584412 other downstream 845734 48551619 ~ 48587888 (+) False G515189
TU585107 other downstream 1242732 48948617 ~ 48954291 (+) False LOC110526072
TU585255 other downstream 1477988 49183873 ~ 49187323 (+) True edf1
TU585185 other downstream 1527694 49233579 ~ 49246453 (+) False LOC110526066

Expression Profile