RNA id: TU584260


Basic Information

Item Value
RNA id TU584260
length 411
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G515061
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47722434 ~ 47722844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaattcgataaacaaattcgtgatggtacctgcccattaaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaaaaaacatcccaaaaaatgttgggtaaccagctgcatattttagatcacaagcttgaattttgagcatgacaaattcgtgatggtacctgcccattaaaacatatctcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaattcgataaacaaattcgtgatggtacctgcccattaaaacatattccaaatgcacagtgactttgaaaaagtaaggaaacaaaaaaaaatacatctaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU584256 lncRNA upstream 5566 47716038 ~ 47716868 (+) True G515057
TU584255 lncRNA upstream 13075 47709155 ~ 47709359 (+) True G515056
TU584250 lncRNA upstream 16549 47705511 ~ 47705885 (+) True G515051
TU584241 lncRNA upstream 49837 47672189 ~ 47672597 (+) True LOC118964879
TU584235 lncRNA upstream 178440 47543347 ~ 47543994 (+) True G515037
TU584338 lncRNA downstream 567367 48290211 ~ 48290564 (+) True G515127
TU584344 lncRNA downstream 592416 48315260 ~ 48315527 (+) True G515132
TU584347 lncRNA downstream 594886 48317730 ~ 48318344 (+) True G515135
TU584349 lncRNA downstream 596043 48318887 ~ 48319224 (+) True G515137
TU584365 lncRNA downstream 608823 48331667 ~ 48331992 (+) True G515153
XM_036980274.1 mRNA upstream 46941 47671331 ~ 47675493 (+) False LOC118964879
XM_036980300.1 mRNA downstream 2787 47725631 ~ 48235995 (+) False LOC118964888
XM_036980301.1 mRNA downstream 230874 47953718 ~ 47955681 (+) False LOC118964889
XM_036980302.1 mRNA downstream 230874 47953718 ~ 47955681 (+) True LOC118964889
XM_036980293.1 mRNA downstream 275062 47997906 ~ 48003429 (+) False LOC110512140
XM_036980294.1 mRNA downstream 275327 47998171 ~ 48003429 (+) False LOC110512140
TU583904 other upstream 205724 47513786 ~ 47516710 (+) True LOC118964881
TU583803 other upstream 393190 47303183 ~ 47329244 (+) True G514662
TU583807 other upstream 402384 47306438 ~ 47320050 (+) True G514665
TU583628 other upstream 699342 47022294 ~ 47023092 (+) True G514499
TU583592 other upstream 794720 46926842 ~ 46927714 (+) True G514464
TU584269 other downstream 227162 47950006 ~ 47952254 (+) True G515069
TU584412 other downstream 828775 48551619 ~ 48587888 (+) False G515189
TU585107 other downstream 1225773 48948617 ~ 48954291 (+) False LOC110526072
TU585255 other downstream 1461029 49183873 ~ 49187323 (+) True edf1
TU585185 other downstream 1510735 49233579 ~ 49246453 (+) False LOC110526066

Expression Profile