RNA id: TU584344


Basic Information

Item Value
RNA id TU584344
length 268
lncRNA type intronic
GC content 0.46
exon number 1
gene id G515132
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48315260 ~ 48315527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caccatagcatcacccacctgtagcacgcgctccagcaggtatatctctctggtcacccccaaaaccaattctttctttggccacctctccttccagttctctgctgccaatgactggaacaaactacaaaaatctctgaaactggaaacacttatctccctcactagctttaagcaccaactgtcagagcagctcacagattactgcacctgtacatagcccacctataatttagcccaatcaactacctctttccctactgtattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU584338 lncRNA upstream 24696 48290211 ~ 48290564 (+) True G515127
TU584260 lncRNA upstream 592416 47722434 ~ 47722844 (+) True G515061
TU584256 lncRNA upstream 598392 47716038 ~ 47716868 (+) True G515057
TU584255 lncRNA upstream 605901 47709155 ~ 47709359 (+) True G515056
TU584250 lncRNA upstream 609375 47705511 ~ 47705885 (+) True G515051
TU584347 lncRNA downstream 2203 48317730 ~ 48318344 (+) True G515135
TU584349 lncRNA downstream 3360 48318887 ~ 48319224 (+) True G515137
TU584365 lncRNA downstream 16140 48331667 ~ 48331992 (+) True G515153
TU584413 lncRNA downstream 216850 48532377 ~ 48587888 (+) False G515189
TU584407 lncRNA downstream 259431 48574958 ~ 48583199 (+) False G515189
XR_005052140.1 mRNA upstream 12840 48299720 ~ 48302420 (+) False LOC110512253
XR_005052138.1 mRNA upstream 12840 48299724 ~ 48302420 (+) False LOC110512253
XR_005052139.1 mRNA upstream 12840 48300478 ~ 48302420 (+) True LOC110512253
XR_005052135.1 mRNA upstream 37718 48272553 ~ 48277542 (+) False LOC118964891
XM_036980312.1 mRNA upstream 37725 48275120 ~ 48277535 (+) True LOC118964891
XR_005052136.1 mRNA downstream 12341 48327868 ~ 48331446 (+) False LOC118936658
XM_036980315.1 mRNA downstream 13528 48329055 ~ 48331446 (+) True LOC118936658
XM_036980306.1 mRNA downstream 39086 48354613 ~ 48393007 (+) False LOC110526080
XR_002472118.2 mRNA downstream 42022 48357549 ~ 48358334 (+) True LOC110514397
XM_036980321.1 mRNA downstream 43326 48358853 ~ 48360349 (+) True LOC118964893
TU584269 other upstream 363006 47950006 ~ 47952254 (+) True G515069
TU583904 other upstream 798550 47513786 ~ 47516710 (+) True LOC118964881
TU583803 other upstream 986016 47303183 ~ 47329244 (+) True G514662
TU583807 other upstream 995210 47306438 ~ 47320050 (+) True G514665
TU583628 other upstream 1292168 47022294 ~ 47023092 (+) True G514499
TU584412 other downstream 236092 48551619 ~ 48587888 (+) False G515189
TU585107 other downstream 633090 48948617 ~ 48954291 (+) False LOC110526072
TU585255 other downstream 868346 49183873 ~ 49187323 (+) True edf1
TU585185 other downstream 918052 49233579 ~ 49246453 (+) False LOC110526066
TU585313 other downstream 989598 49305125 ~ 49307140 (+) True G516011

Expression Profile