RNA id: TU584413


Basic Information

Item Value
RNA id TU584413
length 4815
lncRNA type read_through
GC content 0.42
exon number 2
gene id G515189
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48532377 ~ 48587888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgggatcttttatttcagcacatgaaacatgggaccaacatttttttggttgcatttatttttttgttcagtatagatacgTACCGAGTCATCTTTAAAGGGAAAGATGCACATCCCTAGTTGCCACACACAAGATTGCCCTTAATCCAGAACAAAATCTAATTACAGAAAGCTCAACTGAGATTAAGTGTTGTTTATCCATAAATATTTTACCATGGTTCAAGAGGTGGTCCTTCGAAGCCAGTATTATTACACAGAAACTTTTTATAATCTGGTCTTGTCAAGAGCATCTGTGCTTagattcacaagagtataaagaATGTACAATAATGGTTATCTAAATAAAGTAATTCAATAATGAAAGTACATTATGCAAACACAATTGTACATTTGCTCAAGACAAAAATGTTACATTAATCAAAGAAAATCATTACAAACAGAAATGGCTAGCCATCAGTGAACCAATTCCAACAAGTAAGATttttgaccaggggccatatGTATCAAGCCTATCAGAGTAAGAGTGTGGATCCAGGATTAGTTTagtcttttagatcataatgaataagactaCATGGAGAGggtgggacctgatcctagattctCTCCCACTCAGCTGCTTTGTGAATATGAGACTAGGCTTACGTGATGGAGCTACATTTAATGAGACCAATTTAAATCCTTCTCAACACTTCCAAGGAGACCGCATGGGGAAAAGCACCACAACTAATATTAGCCAGTCTCTTCATGCCACCAAAAAACTTGAGTGAAAGGCAGACTGGACCAGTCTTTTTACAGTGCATCGAGCTTTGAGAAATTGCATTACAGTTGTATGTTCTAAGCCCATTTTCAAGATAACACCACTGCTGCGTTGCGATACTGGGTCCTGAAATACAGATTGAACATAACACACTAACACCTTTGCTGGGGAAAAAAAAAAGCCTTCAGAATCATAGCTCGACATCTCTCCAACTAAGAAATCAAGTACATCAGTGATGTCAAGGTAAATGGAAAAGTAAATATGGAATGACTTCAACGAAAGATTAGtaagaaaaatatatttcacaaaaCATGAGAAACATAAGCTCTCTACAGAATGCACCACGTGTGGTCATCCCAATGTGGAGATTATTGTTGTGAAATGGTTGAGGAATGAGCTTCCCTATcctctggggtgtattcattagtgcaaaaCGATTTGCATtagaaaacattttgcaacaaaaaCAAGGGTttgttattggacaaattcaggtaggtccttACCCATTTGCTTTCATTTGGTTCATAGTGTATACACCAGAGGAATCTGGTGGAGGAAGAGTTCATTGTAAAGTCTGAAATGGAATCGTAACATCAATCAActtgtttgactccgttccatttctACCATtaaaatgagcctgtcctcctatagggcctgccaccagcctcctctggaatAGACCCCTGCTAAGACATGAAGAAAAGGGGCAGGAACCGCTTTAGGTGAGTAGCTAAGATATCTGCGTGGCTCAGACAGCGCTCCTCGATGCTCCATTACAAGAAGGGAATGAATCTGGTGTTATTAGAATTGGAACAaaccagacaaaaaaatatatatatatttttttttttttaattttacccctttttcgtggtatccaattgttgtagtagctactatcttgtctcatcgctacaactcccgtacgggctcgggagagacgaaggttgaaagtcctccgatacacaacccaaccaagccgcactgcttcttaacacagcgcgcatccaacccggaagccagccgcaccaatgcgccggaggaaacactgtgcacctggccaccttggttagcgcacactgcgcccagcccgccacaggagtcgctggtgcgcgatgagacaaggacacccctaccgaccaagccctccctaacccgggcgacgctaggccaattgtgcgtcgccccacggacctcccggtcgcggccggttaagacagagcctgggcgcgaacccagggactctgatggcacagctggcgctgtgCCATCCGGGAGGcgtaaccactgcgccacccgggaggcattAAAGAGATATTTTACTGAGAAAACACATTATCGTTTTTTTTTCTCGATGCAgtccaaaacatttttttgcatGTCATCAGTTTTCAAGATAGAGCACTTAGTAAAAATCTAAAAGTGTGATGATGATGCATTTTGTGTCAGTTCCATTTTGCATCATCATCCCCCCCTTTTGTTTTGTCATATCCTCAATAATACCAGAGGGTTCGCAACTGTATAATGGTGCGGATGACGctcattctagtacagttaagtGCAGAAGTAGCAGCAGTTGAACTAGTCGCCTATAAGCTTACCACTACACGGATCGTCTTCACAATTTGGTCGTTGAACCTTGACTTGTCAGTGTGTAAGGTGAATGTGAGAGTGTGACTCCCCACTTCCAAGGCCATGAGAGTGAAGGTGACAAGACCAACTGAGCCGCTTTCCAAAAGAGAGGTCTTGTCACAGTTGGTAGTCTTTATGCCGTCATCTTTCGTTGGTTTTCCTTGGAACAGGCACACCCCTGCCCCAGCGGTCAGAGTTACACAATACTAGCCACGGATGATACAGACAGAAAGAAGAATGGAAGCAATAAGATGCAAGTAAATCAGTACTTAAAATGGGCAGGTATACACCGGTACTGAATACCAGTAACTTGATTTTTGACTGCTTGAGTACCGGCACATCCTATAGAATATTGTCTTCACAAAAAACAGTAATACTGGCCCTTATTTCATTCCACTTCAAGCACATCATAAATTCACCAAAATATGCATTATATGATAAATGTTTTCAATCCTAATGACATGAATAATACCaggtaaatgtttttttattattttcaatgcATTTCAATAGAACCTCATTTACTGGCTTCACCTTAATATTGTCTTCTGCCTGGTTATAGACGGAGCCTCGCAGCTCGATCTGCTCTCCACGCACCATGGAATAGGGCAGGGGCACATCTACACTCACTGCCTGAGTAACTGAGACCTTGATGGGGTCCGCCACACAGATCCCTGAGCTCCCTGGGAAGAATAAGAAAAACATTAACAACAAAACCGGGGCGACCAAGGGTTGATTCACTCTTCTGTTTTGAGCCAAGCTTTGCTGGCCTGGCTACACAACTAAAATGGCAGCGGGGAGCCATGTAGCTCATACAGGAATGATAAAGGCCTAGTGaccaattaaaaatatatatatattgtgattTATCAGGGAATGCTGAATGACCCACATCAACCCTACTTCCCTCGGCTATGACAACTACCATAGTTCCTGGAACtgtgctggaaaggacaatgtgtAGAGAAAATACTAGAGCCTGCATGGTACGGTTCGGGTTGGCACAATGTGTGAAAGGGGTACAACTGACTGTGTAGAATAGTGGCTAAGGACTCCAGCAAAGATAGTTGCTATTATATGGATGAAAAAATAAGATTGCTTGGTGTGTTGAATGACTGTGGTAAATGTACCTAATTTCTCCTGTAGGTGGTGCTAGGCGTCAGTGTTTGTTCACCAACTTACCCTCCTTCTTGAACACGCCGACAGCTTTTATCTCCCAAGTGGTCAGAGAGTCTGGGAGATTTCTGTTCAAGGTAATCTGCCCTGACCTAGTTGATGACAACAGTAACACACTTACTTGGCCTCAGGTCAACCAAGACACAAGGGCCACTGGGCTAGCACACTCCCCTTTTAGATACTGTTAGATAACGGTACATTCAATTAACATAgagaatacaattgttaaatctGTCTTTCAGTATTGTCTCACGTAACTTACTTTGCATTAATTGTCAACCTTAATGTTCTATATTTAATATCTCTTCCAGGTAAGAAGATATATTGCATTTATagtttgtttatattttttatgcTATGCCAAGAACCTTTGTTTTTCTCACCTGACTGGTTGTACTTCCCATAGCCAGCTCTCTGGGAAGTAGCTGCGTATCTGAGTGGGCATCAGGTCAAAGAGAATAGCCATCTCTGCATAGAAAAGGCAGGGATTGTCAGTTAAAACACAActatgctgaccctcaacacggggactCTCAGGGGTGCCTGCTaagtccactcctgtactccctgttcacctgcgactgcatgactccaacaccatcattacttTTGCTGATGATACAATGGAGctccctgctatccaggaccatTGTGAACCAGAACAGGACCACAAAAAAATCCACAGGACCACAACAgggactacccactgggcacacactggttgattCAATGTTGTTGCAACGTAATTTGACAATGTATTGTGACATGGAATCACTCCGAATTTACTTTCACATACAGCTTGTACAAGAAAAGTTTGAGGAGTTACTGTTCAATGTTATTTATGTAGTCTACGCAAATTAGTATGGAAGCTGATCAATGTCAAAATGTGTTAACATGATAGCTCAGCTTAATTGTACACAGTTTGTTTCCAAAGTTAAGCAGAGTACATAGAGGTAGGCATTTGGATGATGGACTTGTTCTCACTGATGTGCATTACCTCTCATACAGCAGTAGAAGTCAATGTCCAGGCAGAAATCGTTGGACTGTGACTTCAGATTTTATTTCAAGGTTGATAGCTTGACATTGAAACAATGACATTGATTAAAGAATACAATTTTATTATCAACATTGAAACAAGGGAAAATCAAATGTGTGCCCCGTTTCAAGAAACTATGCGTATGTCGCACATCAGTACTTTCCaggagtgtcacgttctgacctctatttcctttgtttttgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU584365 lncRNA upstream 200385 48331667 ~ 48331992 (+) True G515153
TU584349 lncRNA upstream 213153 48318887 ~ 48319224 (+) True G515137
TU584347 lncRNA upstream 214033 48317730 ~ 48318344 (+) True G515135
TU584344 lncRNA upstream 216850 48315260 ~ 48315527 (+) True G515132
TU584338 lncRNA upstream 241813 48290211 ~ 48290564 (+) True G515127
TU584415 lncRNA downstream 7630 48595518 ~ 48597251 (+) False G515190
TU584416 lncRNA downstream 7630 48595518 ~ 48619629 (+) True G515190
TU584493 lncRNA downstream 11895 48599783 ~ 48602381 (+) True G515262
TU584543 lncRNA downstream 86996 48674884 ~ 48675558 (+) True G515308
TU584589 lncRNA downstream 136606 48724494 ~ 48724744 (+) True G515346
XM_036980322.1 mRNA upstream 3619 48419773 ~ 48528758 (+) False cntrl
XM_036980324.1 mRNA upstream 3619 48419773 ~ 48528758 (+) False cntrl
XM_036980323.1 mRNA upstream 3619 48419825 ~ 48528758 (+) True cntrl
XM_036980306.1 mRNA upstream 139370 48354613 ~ 48393007 (+) False LOC110526080
XM_036980304.1 mRNA upstream 139370 48386604 ~ 48393007 (+) False LOC110526080
XM_021606673.2 mRNA downstream 361104 48948992 ~ 49034090 (+) False LOC110526072
XM_021606674.2 mRNA downstream 375671 48963559 ~ 49034090 (+) False LOC110526072
XM_021606672.2 mRNA downstream 474562 49062450 ~ 49063259 (+) True cmlc1
XM_021606671.2 mRNA downstream 488769 49076657 ~ 49134305 (+) True qsox2
XM_021606668.2 mRNA downstream 558239 49146127 ~ 49156002 (+) True LOC110526069
TU584269 other upstream 580123 47950006 ~ 47952254 (+) True G515069
TU583904 other upstream 1015667 47513786 ~ 47516710 (+) True LOC118964881
TU583803 other upstream 1203133 47303183 ~ 47329244 (+) True G514662
TU583807 other upstream 1212327 47306438 ~ 47320050 (+) True G514665
TU583628 other upstream 1509285 47022294 ~ 47023092 (+) True G514499
TU585107 other downstream 360729 48948617 ~ 48954291 (+) False LOC110526072
TU585255 other downstream 595985 49183873 ~ 49187323 (+) True edf1
TU585185 other downstream 645691 49233579 ~ 49246453 (+) False LOC110526066
TU585313 other downstream 717237 49305125 ~ 49307140 (+) True G516011
TU585370 other downstream 798626 49386514 ~ 49387212 (+) False LOC118964898

Expression Profile